Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05089 ATGTCTTCGTGTTTGAGTGGAACAGGGGCAAGATTCGATTTAGACATAGTTAAATCACCACCATGTTCATGGAGTAGAACAACATCACAAACATCTTCTTCACCTTCATCGACAATATCAGAATCAAGCAATTCACCACTTATTACAATCTCAACCACTAAACCCCGAACCCCCAGAAAACGACCCAACCAAACCTACAACGAAGCTGCAACACTTCTTTCAACTGCATATCCGAACCTCTTCACTACTCCAAACCTAAAAACAAATCCAAATAATAAATTCTCCAAATCCGAAAAAACAATAACAACAACAAGTCATGAATTCGACTCTTCTCAACTTTTTTTACCTCTCGGTGTATTTGACACGTCATCGTCTTTTTTACTTCACGGCCCAATTCAGAAGCCCATTAGGCCCAATTTCAATTCCGAGCCCAAACCGGTGAAACCGTGTCAGAGTCCCGGAGAAATTAGTTCAATGGTGAAATCCCTAGAATTGAACGATGACGATGATGATTTCGACGCCGAATCGATTCTCGATGAGGAAATTGAAGAAGGAATTGATAGTATCATGGGAGGGAGAATTGAACAAGATGAATCTAATGTATCTTCTTTCTCTCATCATCATCCATGGATTGGTTTTGGCGGGAAATTCGATTTCCGGTTAGGGTTACAGAGAGCTGGAGTTAGAGCTCTGAGACATGTTGATGAAGGTAATTGGTGGAATTTTCCGGCGGTTGATATGCTTAAAATTTCGCCTAAAATATGCAGTGTCGGCAACAAGACGGCGGCGCCGGTGACTGAAAAGAAGAAGAAAAAGAAAGTAGTTGCGGCGGTGGTGGAGAAATCGAAGGACGAGTTGTTGAAAGAAACAGAGTTGCCAAAGTCGAAAACCAACGGTTTGTTGTTGAAATTGAATTACGACGGCGTTCGGAAAGCTTGGGATGACCGGGGTACACCGTTCGCCGACGACAGCCCTGTCTCCGATGCTCCTGGAAACGATGTCAATGCACGGTTGTCACAAATTGATTTGTTGTGGGAGAATGGAGGAGGAAGTGGTGGTGTAAGAGAAGCTAGTGTGTTACGCTACAAAGAAAAACGACGTACACGTCTCTTCTCTAAGAAGATCAGATATCAAGTGAGGAAAGTCAATGCAGATCGACGGCCAAGAATGAAGGGGCGATTTGTTAGGAGGCTGAATGCTAGCTCAAATGAACACAAATGGTGTTTGTAG 1230 0.4325 MSSCLSGTGARFDLDIVKSPPCSWSRTTSQTSSSPSSTISESSNSPLITISTTKPRTPRKRPNQTYNEAATLLSTAYPNLFTTPNLKTNPNNKFSKSEKTITTTSHEFDSSQLFLPLGVFDTSSSFLLHGPIQKPIRPNFNSEPKPVKPCQSPGEISSMVKSLELNDDDDDFDAESILDEEIEEGIDSIMGGRIEQDESNVSSFSHHHPWIGFGGKFDFRLGLQRAGVRALRHVDEGNWWNFPAVDMLKISPKICSVGNKTAAPVTEKKKKKKVVAAVVEKSKDELLKETELPKSKTNGLLLKLNYDGVRKAWDDRGTPFADDSPVSDAPGNDVNARLSQIDLLWENGGGSGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLNASSNEHKWCL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05089 409 Pfam CCT motif 355 396 IPR010402 GO:0005515
Trre16g05089 409 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
Trre16g05089 409 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 399 - -
Trre16g05089 409 MobiDBLite consensus disorder prediction 22 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05089 Trre-Chr16 54498220 54501138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05089 288 397 C2C2-CO-like Transcription Factor Family AT1G73870 46.341 3.51e-23 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g05089 CCT 7.9e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05089 - - aprc:113845796 433.335