Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05084 ATGCGCCCACCAGCAACAAAAGTCAATTATAAAGTAGGAGACAAAATTGAGGTTTGCAGCAAAGAAGCAGGGTTTATAGGTTCGTACTACGAAGCCACAATTGTTTCGTGTCTTGAGAATGGGAAATATATGGTTCGTTACAAAACCATACTTGAAGATGATGAATCAGATCTTCTTAAGGAGACACTTTTCCCGAAGGATATTCGTCCAATACCGCCGCGTGTCAAAAAATCTCAGAGGTTCCAACTCGACCAAAGAGTTGATGTTTTTTATAACGATGGCTGGTGGATAGGAATAATTATTGGTCAGAAGATCCTCATCCGAAAGCGTTATTACATTAGGGTGCATTTTAGCACTCTCAATAAAATGATGTACTGTCCTTGTGCTCGGATCAGGGTTCACAAGGAGTTGATTTATGGAGAGTGGGTTTGA 432 0.4051 MRPPATKVNYKVGDKIEVCSKEAGFIGSYYEATIVSCLENGKYMVRYKTILEDDESDLLKETLFPKDIRPIPPRVKKSQRFQLDQRVDVFYNDGWWIGIIIGQKILIRKRYYIRVHFSTLNKMMYCPCARIRVHKELIYGEWV 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05084 143 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Trre16g05084 143 SMART agenet_At_2 8 76 IPR014002 -
Trre16g05084 143 SMART agenet_At_2 79 139 IPR014002 -
Trre16g05084 143 Gene3D - 5 83 - -
Trre16g05084 143 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 143 - -
Trre16g05084 143 Pfam Agenet domain 13 73 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05084 Trre-Chr16 54470647 54471078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05084 20 136 PHD Transcription Factor Family AT5G58610 28.676 1.74e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05084 - - cam:101489110 164.081