Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05070 ATGACCAAGAGAACCAAGAAGGCTGGCATTGTTGGCAAATATGCTACCCGTTATGGTGCTAGTTTGCGTAAGCAGATTAAGAAGATGGAAGTTAGTCAGCACAGCAAATTTTTCTGTGAATTTTGTGGAAAGTATGCTGTGAAGAGAAAATCTGTAGGAATATGGGGATGTAAGGATTGCGGTAAAGTGAAAGCAGGGGGAGCTTATACTTTGAACACTGCAAGTGCCGTGACTGTTCGGAGCACCATCAGGCGGTTGAGGGAACAAACTGAAAGTTAA 279 0.4337 MTKRTKKAGIVGKYATRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKSVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05070 92 PANTHER ZGC:171772 1 92 - -
Trre16g05070 92 Pfam Ribosomal L37ae protein family 4 88 IPR002674 GO:0003735|GO:0005840|GO:0006412
Trre16g05070 92 FunFam 60S ribosomal protein L37a 2 92 - -
Trre16g05070 92 NCBIfam ribosomal protein eL43 1 91 IPR002674 GO:0003735|GO:0005840|GO:0006412
Trre16g05070 92 SUPERFAMILY Zn-binding ribosomal proteins 10 82 IPR011332 GO:0006412
Trre16g05070 92 Gene3D - 1 92 IPR011331 GO:0003735|GO:0005840|GO:0006412
Trre16g05070 92 Hamap 50S ribosomal protein L37Ae [rpl37ae]. 4 72 IPR002674 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05070 Trre-Chr16 54313104 54314176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05070 1 92 Cytoplasmic Ribosomal Protein Gene Family AT3G10950 92.391 6.95e-59 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05070 K02921 - rcu:8276062 186.037