Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05067 ATGACTAGTGAGACATTTGGTAATTACACGGTGCCATCTTTCCTGCGACAGGTTTCCGGAACTATGAATATGTCAAAGGATTCTCCTCCTACAGATTGTGATTTAGAGACTGGTTCTGCCAATGCCAATGCACGCTCTTCTGATTTAGTTGGTGAAGACAACACATCTGATCCATTTGATATTAGCAGAACAAAGAATGCTTCTACTCAACGACTCAATCGTTGGAGGCAAGCTGCATTTGTGCTTAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTGAAGAAAGAAGAAGAGAGGAAGCAAATATTGAGGAAGATTATAGTGCATATACGAGCCATTCAAGCTGCATATCGTTTCAAGGAAGCTGAGAAGAACACAAATAGAACCATCCTACCTCCTTCAACTTCAAGCTCTAATGGAGATTTTTCAATTGGACAAGAGCAACTTTCTTCAATCTCAAGAGAGCATGATATTAATGCTCTGAAAGAATATGGAGGGGTTGTAGGGTTATCAAATTTGTTGAAAACCAATTTAGTGAAGGGTGCTAAAGGTGATGATGCTGACTTGGTAATCCGAAGGAATGCATTTGGTTCTAACAATTACCCTCGAAAGAAAGGAAGAAGTTTTTTGATGTTTATCTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAACGGTAGCTGCTGTGTTTTCATTAGCACTAGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTTTTCTTGTTATTGCTGTTACAGCCATAACCGATTATAAGCAGTCTCTTCAATTTGAAGATTTAAATGAGCATAAAAGAAACATACATTTTCAGGTTATAAGAGATGGCAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTAGGTGATGTTATACCCCTCAATATTGGTAACCAGGTCCCTGCCGATGGAATTTTGATCACCGGCCACTCTCTTGCAATTGATGAATCAAGCATGACCGGGGAGAGCAAGATTGTTAATAAGCATTCTAAGGAACCTTTTTTGATGTCTGGATGTAAAGTTGCAGATGGAAGCGGCACTATGCTGGTAACCGCCGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGACACTGGTGAAGAAACACCATTGCAGGTACGCTTGAATGGCCTTGCTACCTTCATCGGTATTGCTGGACTTACTGTGGCTGTCGTTGTTCTAGTTGTGCTACTGGCCAGATATTTCACTGGGCACACTAAAAACCCAGATGGAAGTGTTCAATTTATAGCGGGAAAGACTAGGTTCGGTGATGCTCTTAATGGAGTAGTTAAGATAGCCACTATTGCGGTCACCATTGTAGTGGTTGCAGTTCCTGAAGGACTCCCTTTAGCAGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCGGCCTGTGAGACAATGGGATCAGCCACAACCATTTGCAGTGATAAGACTGGAACGTTGACAATGAATCAGATGACTGTGGTTGAGGCATGTGTTGGCGGGAAGAAGATTATTCGTCCTGACGATAAGTCACAGCTTTCTCCTATCCTTCATTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTATTTTTGTACCTAAGGGTAGCAATGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGATTACAGCTTGGGATGGATTTTGAGGCTGCTAGATCAGAATCATCAATCATACATGTTTTTCCATTCAACTCGGACAAAAAAAGAGGCGGAGTAGCACTACAGAAGCCTGACGGTGGAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTTGCCTTCTGCACTCAGTATTATGATACAAATGATCAGTTGGTGGATATGGATGAAGAGAAGATGACAATTTTTAAAAATGTTATTGAAGACATGGCTGCTGACAGTCTACGCTGTGTTGCCATTGCATATAGATTATTAGATGAAATGGAGAACATTCCAACCTGCGAAGAAAAAATTGCTCACTGGTTACCAGAAGATGATCTTGTTTTACTAGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTAAAAGATGCAGTGCACCTTTGCCAAAAAGCTGGGGTTATGGTAAAAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATAGTTAGTTCATTTGCTGATGCTACAGAGCCAAACATCATTGAAGGAAAAACATTCCGAGCCTTATCAGATGGACAGAGAGAAGAAATTGCTGAAAGGATCTTGGTTATGGGACGGTCGTCTCCTAATGACAAGCTTTTGCTTGTTCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACAGGAGATGGAACAAATGATGCTCCTGCACTACATGAGGCCGATATAGGTCTTGCAATGGGAATTCAAGGTACAGAAGTTGCTAAAGAGAGCTCCGATATCATTATTTTGGATGACAATTTTGCTTCTGTTGTGAAGGTTGTCAAATGGGGGCGATCTGTGTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCTCTTGTTATAAATACCATCGCTTCATTTTCCACTGGTGAAGTCCCGCTAAATACAGTACAGCTTCTTTGGGTAAATCTAATCATGGATACTCTTGGAGCACTAGCCTTGGCAACTGAACCACCAACTGATCACCTTATGGATCAGCTTCCAGTGGGTCGAAGAGAACCTCTTGTAACAAATATTCTGTGGAGGAATCTGCTAATACAGGCAATGTACCAAGTTTCTGTCTTGCTTATACTCAATTTCCAAGGCAGGAACATACTGAGTCTGAGGCACGAAAGCAACGACTTTGCACTCAAAGTGAAGAACACTATAATATTCAATGCATTTGTTCTTTGTCAAGTCTTTAATGAATTTAATGCACGAAAGCCAGATGAATTCAACATTTTCAAGGGTGTTACCAGAAATTACCTATTTATGGTGATAGTGGGATTAACTATAGTACTCCAGATTGTCATCATTGAATTTCTTGGAACTTTCACTAAAACAGTCAAGCTTAATTGGAAGCAGTGGCTCATCTGTGTTCTTATAGGATTTATCAGCTGGCCTCTGGCTGTGATTGGAAAACTGATACCAGTACCAGCAGTGACTCCCATGAATAACTGCTTTCGAAGATTTCGTCATGGAAGGACTAAAAGAAAGATGGAGTCTGAAGCTTCTCAGTAG 3327 0.4094 MTSETFGNYTVPSFLRQVSGTMNMSKDSPPTDCDLETGSANANARSSDLVGEDNTSDPFDISRTKNASTQRLNRWRQAAFVLNASRRFRYTLDLKKEEERKQILRKIIVHIRAIQAAYRFKEAEKNTNRTILPPSTSSSNGDFSIGQEQLSSISREHDINALKEYGGVVGLSNLLKTNLVKGAKGDDADLVIRRNAFGSNNYPRKKGRSFLMFIWDACKDLTLIILTVAAVFSLALGIKSEGIKEGWYDGGSIAFAVFLVIAVTAITDYKQSLQFEDLNEHKRNIHFQVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVNKHSKEPFLMSGCKVADGSGTMLVTAVGINTEWGLLMASISEDTGEETPLQVRLNGLATFIGIAGLTVAVVVLVVLLARYFTGHTKNPDGSVQFIAGKTRFGDALNGVVKIATIAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACVGGKKIIRPDDKSQLSPILHSLLIEGVAQNTNGSIFVPKGSNGVEVSGSPTEKAILHWGLQLGMDFEAARSESSIIHVFPFNSDKKRGGVALQKPDGGIHIHWKGAAEIVLAFCTQYYDTNDQLVDMDEEKMTIFKNVIEDMAADSLRCVAIAYRLLDEMENIPTCEEKIAHWLPEDDLVLLAIVGLKDPCRPGVKDAVHLCQKAGVMVKMVTGDNVKTAKAIAVECGIVSSFADATEPNIIEGKTFRALSDGQREEIAERILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALVINTIASFSTGEVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDQLPVGRREPLVTNILWRNLLIQAMYQVSVLLILNFQGRNILSLRHESNDFALKVKNTIIFNAFVLCQVFNEFNARKPDEFNIFKGVTRNYLFMVIVGLTIVLQIVIIEFLGTFTKTVKLNWKQWLICVLIGFISWPLAVIGKLIPVPAVTPMNNCFRRFRHGRTKRKMESEASQ 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05067 1108 MobiDBLite consensus disorder prediction 20 53 - -
Trre16g05067 1108 NCBIfam calcium-translocating P-type ATPase, PMCA-type 156 1080 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre16g05067 1108 Pfam haloacid dehalogenase-like hydrolase 505 830 - -
Trre16g05067 1108 FunFam Calcium-transporting ATPase 833 1082 - -
Trre16g05067 1108 Pfam E1-E2 ATPase 286 486 - -
Trre16g05067 1108 FunFam Calcium-transporting ATPase 710 861 - -
Trre16g05067 1108 Pfam Ca2+-ATPase N terminal autoinhibitory domain 57 99 IPR024750 GO:0005516
Trre16g05067 1108 MobiDBLite consensus disorder prediction 20 62 - -
Trre16g05067 1108 NCBIfam HAD-IC family P-type ATPase 783 896 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g05067 1108 NCBIfam HAD-IC family P-type ATPase 448 542 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g05067 1108 FunFam Calcium-transporting ATPase 518 716 - -
Trre16g05067 1108 Pfam Cation transporting ATPase, C-terminus 901 1078 IPR006068 -
Trre16g05067 1108 Gene3D - 192 384 - -
Trre16g05067 1108 Pfam Cation transporter/ATPase, N-terminus 168 233 IPR004014 -
Trre16g05067 1108 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1080 IPR023298 -
Trre16g05067 1108 FunFam Calcium-transporting ATPase 216 273 - -
Trre16g05067 1108 ProSitePatterns E1-E2 ATPases phosphorylation site. 510 516 IPR018303 -
Trre16g05067 1108 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 515 713 IPR023299 GO:0000166
Trre16g05067 1108 Gene3D - 518 716 IPR023299 GO:0000166
Trre16g05067 1108 SMART Cation_ATPase_N_a_2 164 238 IPR004014 -
Trre16g05067 1108 Gene3D - 505 861 IPR023214 -
Trre16g05067 1108 SFLD p-type atpase 490 868 IPR044492 -
Trre16g05067 1108 SUPERFAMILY Calcium ATPase, transduction domain A 285 381 IPR008250 -
Trre16g05067 1108 FunFam Calcium-transporting ATPase 67 123 - -
Trre16g05067 1108 PANTHER CATION TRANSPORTING ATPASE 130 1080 - -
Trre16g05067 1108 FunFam Calcium-transporting ATPase 9 plasma membrane-type 362 532 - -
Trre16g05067 1108 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
Trre16g05067 1108 PRINTS P-type cation-transporting ATPase superfamily signature 508 522 - -
Trre16g05067 1108 PRINTS P-type cation-transporting ATPase superfamily signature 816 835 - -
Trre16g05067 1108 PRINTS P-type cation-transporting ATPase superfamily signature 731 741 - -
Trre16g05067 1108 PRINTS P-type cation-transporting ATPase superfamily signature 709 720 - -
Trre16g05067 1108 PRINTS P-type cation-transporting ATPase superfamily signature 840 852 - -
Trre16g05067 1108 Gene3D - 216 1070 - -
Trre16g05067 1108 FunFam Calcium-transporting ATPase 261 384 - -
Trre16g05067 1108 SFLD Haloacid Dehalogenase 490 868 - -
Trre16g05067 1108 Gene3D - 67 123 - -
Trre16g05067 1108 SUPERFAMILY HAD-like 506 921 IPR036412 -
Trre16g05067 1108 CDD P-type_ATPase_Ca_PMCA-like 193 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05067 Trre-Chr16 54295604 54304670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05067 37 1097 Primary Pumps ATPases AT4G29900 70.561 0.0 1515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05067 K01537 - gmx:100792945 1669.44