Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05056 ATGGCTGCAGATCCAGTAATGATTTCCAAGATGAGGATGCAAGAACAGATAGCTATACAAGAAGCTGCTTCTGCTGGAATGAAAAGCATGGAACATTTCATTCGTGTGCTTTCTTCTTCATCATCTTCTTCGTCTTCTGATCAACGAAACCATTTAGATCTGGTAAATAAACTCGATTGCACTGAAATTACTGATTTCACCGTTTCTAAGTTCAAACAGGTTATTAACTTGTTGAATCGAACCGGTCATGCTCGCTTTCGTCGCGCACCGTCCAATTTTTCTTCTTCTTCTCAATTTCAATCACAGATTCAATCTGAAAAATTCAACCCTAAACCACAGTCAACTACTCTTGATTTTGCTAAACCAATCCAAACTGTTAAGCCAACTCCAAATCTGAAACCCAAACAGAACCAATCTACAGATTTATCTGTTTCTCAATACTCAAAATCCAAGGAAACCTATAGCGTCTCCACCACTACTTCCTCCTTCCTTTCCACCATCACCGGAGACGGAAGCGTTTCCGATGGCAAAATCGGTCCTATCATTTCCTCCGGTAAGCCACCTCTCGCTTCATCTCACCGGAAAAGATGTCATGAAGCCACCGTCTCCGGCAAAGTCTCGTCCTCCGTTCCCTGCCATTGCTCCAAGAGAAGAAAATCTCGCGTGAAGAGAACAATTCGCGTTCCTGCAATAAGTTCCAAGGTCGCCGATATTCCCGCAGATGAATTCTCATGGAGGAAGTACGGTCAAAAACCTATTAAAGGTTCACCTTACCCACGTGGTTACTACAAGTGCAGTAGCATTAAAGGATGTCCGGCGAGGAAGCATGTGGAAAGGGCACAAGATGATCCAAACATGCTTATTGTAACCTATGAAGGAGAGCACCGACACTGGCAAACCGCCGGAAACGCTGCCGGAGTCACCACATCTCAGGCTTCTTAA 942 0.4427 MAADPVMISKMRMQEQIAIQEAASAGMKSMEHFIRVLSSSSSSSSSDQRNHLDLVNKLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSNFSSSSQFQSQIQSEKFNPKPQSTTLDFAKPIQTVKPTPNLKPKQNQSTDLSVSQYSKSKETYSVSTTTSSFLSTITGDGSVSDGKIGPIISSGKPPLASSHRKRCHEATVSGKVSSSVPCHCSKRRKSRVKRTIRVPAISSKVADIPADEFSWRKYGQKPIKGSPYPRGYYKCSSIKGCPARKHVERAQDDPNMLIVTYEGEHRHWQTAGNAAGVTTSQAS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05056 313 Gene3D WRKY domain 223 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g05056 313 Pfam WRKY DNA -binding domain 241 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05056 313 SMART WRKY_cls 239 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05056 313 Pfam Plant zinc cluster domain 194 237 IPR018872 -
Trre16g05056 313 ProSiteProfiles WRKY domain profile. 234 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05056 313 MobiDBLite consensus disorder prediction 125 144 - -
Trre16g05056 313 FunFam WRKY transcription factor 65 223 300 - -
Trre16g05056 313 MobiDBLite consensus disorder prediction 129 144 - -
Trre16g05056 313 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 302 IPR044810 GO:0003700
Trre16g05056 313 MobiDBLite consensus disorder prediction 88 118 - -
Trre16g05056 313 SUPERFAMILY WRKY DNA-binding domain 237 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05056 Trre-Chr16 54256306 54257490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05056 12 300 WRKY Transcription Factor Family AT2G24570 51.235 2.00e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g05056 WRKY 6.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05056 - - gmx:732587 387.882