Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05054 ATGGGGAACTGTTTGAATAGAAGTCTTCAATCCTCAGGCGATCGTCCCAACTCCAATACTGCTCCTGACACAAACAGTCAATCAGGCAGTATTCTATTTTCTGGTGGTCTCAGCAACTTAAGATTGATAAGGAACGGCAATTCCACATCTCTTGGGCGTAGCAGCAACTCTGGAGGAAATAGTAGACTATTTAGTAGTAGTAATAATGACTCAACAGGCAATAACACAAGTACATCCTTTTGGGATTCTGAGAATAGCCAGGCTTCTCGAGTAAGAGATGAGGAAGAGTTTCCTTATGGGCATATCTTGGATGCTGCAAACTTGAAAGTTTTTACTTGGGCAGAACTGAAATCAGCTACTAGAAATTTCCGTCCTGAAACTCTGTTAGGAGAGGGTGGGTTTGGTAAAGTATTCAAGGGTTTGATAAAGGAGGGAGCAGAATCAAAAAAAGGGGGGGGTTTGACTATTGCCATCAAGATAATAAATTCTCACAGTTTGCAAGGATTTGCAGAATGGCAGTCAGAAGTGAATTTCTTAGGAAGGCTTTCTCATCCCAACCTCGTAAGGCTGTTGGGATTTGGGCGTGAGGATGGTAAGCTATTTCTCGCGTATGAATTTATGCCCCGCGGTAGCTTGGATAACCACCTATTTGGAAGAGGTTCAAATGTTCGGCCACTTTCATGGGACAAAAGGCTGAAAGTTATGATTGGAGCAGCTAGGGGACTAAATTTCCTTCACTTGGAGAAAATTATACACAGAGATTTTAAGTCCTCAAATATACTACTTGACAAGGCATACACAGCCAAGTTATCAGACTTTGGCTTGGCCAAATGTGGTCCTTCCGATGATCACACTCACGTATCAACACGGGTTGTGGGAACAGGCGGTTATGCTGCCCCGGAGTACATGGCCACAGGTCATTTGTATGTGAAAAGTGATGTATATGGATTTGGGCTTGTTTTGATGGAGATACTAACCGGTAAGCGGATAGGTGAGATAAGACGCCTTGGTGAGCGAAAGTCCTTATGTGATTGGCTGAAAACAAACCTATTAAATAGAGCAAAATCGAGAAGCAACATGGATCCAAAGTTGGAAGGCAAGTATCCACCCAACTTAGCTTCACAAGTAGCTCAACTTGCTCTCAAATGCATCCAAACAGAACACAAAGTTAGGCCATCAATGAAGGAAGTTGTTGAAACATTGGAAAGTATTGAAGCAGCCAATGATAAGCCAGCTGATAACAGAAAAAGGACTAGTAATTCAAGGGAAGTTCAACTACATGGCCAACCAGATGGTGGTTAA 1302 0.4263 MGNCLNRSLQSSGDRPNSNTAPDTNSQSGSILFSGGLSNLRLIRNGNSTSLGRSSNSGGNSRLFSSSNNDSTGNNTSTSFWDSENSQASRVRDEEEFPYGHILDAANLKVFTWAELKSATRNFRPETLLGEGGFGKVFKGLIKEGAESKKGGGLTIAIKIINSHSLQGFAEWQSEVNFLGRLSHPNLVRLLGFGREDGKLFLAYEFMPRGSLDNHLFGRGSNVRPLSWDKRLKVMIGAARGLNFLHLEKIIHRDFKSSNILLDKAYTAKLSDFGLAKCGPSDDHTHVSTRVVGTGGYAAPEYMATGHLYVKSDVYGFGLVLMEILTGKRIGEIRRLGERKSLCDWLKTNLLNRAKSRSNMDPKLEGKYPPNLASQVAQLALKCIQTEHKVRPSMKEVVETLESIEAANDKPADNRKRTSNSREVQLHGQPDGG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05054 433 FunFam Serine/threonine-protein kinase BIK1 89 206 - -
Trre16g05054 433 MobiDBLite consensus disorder prediction 48 86 - -
Trre16g05054 433 SUPERFAMILY Protein kinase-like (PK-like) 103 401 IPR011009 -
Trre16g05054 433 PANTHER OS01G0588500 PROTEIN-RELATED 72 405 - -
Trre16g05054 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Trre16g05054 433 MobiDBLite consensus disorder prediction 404 422 - -
Trre16g05054 433 MobiDBLite consensus disorder prediction 48 87 - -
Trre16g05054 433 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 207 415 - -
Trre16g05054 433 MobiDBLite consensus disorder prediction 404 433 - -
Trre16g05054 433 Pfam Protein tyrosine and serine/threonine kinase 127 401 IPR001245 GO:0004672|GO:0006468
Trre16g05054 433 ProSiteProfiles Protein kinase domain profile. 123 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05054 433 Gene3D Transferase(Phosphotransferase) domain 1 207 427 - -
Trre16g05054 433 Gene3D Phosphorylase Kinase; domain 1 107 206 - -
Trre16g05054 433 ProSitePatterns Protein kinases ATP-binding region signature. 129 159 IPR017441 GO:0005524
Trre16g05054 433 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05054 Trre-Chr16 54218794 54221277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05054 109 409 Glycoside Hydrolase AT3G07070 43.092 3.18e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre16g05054 PK_Tyr_Ser-Thr 6.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05054 - - gmx:100813304 596.275