Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05047 ATGGAAGAAAGTGATCATGATCATGAAGAATGCAACACAGGTTTATGTCTAGGATTAGGAGGAGGACACGTGGCAAAAAAGGAGAAGAAGCAGAAATTAGTGAATAAACCTTTGATGGCTTGTTTTGACCTAGCTTTTGAGCTTTCTCCAAAAGGAGAAGCCATGAACGTATACAATAATAATCATAACAACATGAAGAAGAAGAAGGGTGAAAGATTGAGCTTGGAGAGACAACAAAATTATCCGAATGTAACGTCTAGCACCGATTCAGAAAACAACAACAACAACAACAACAACGATAGTAGAAAGAAATTGAGGCTAACAAAGGAGCAATCAACCATCCTTGAGAACACCTTCAAACTCCACAACACTCTTAATCCGGTCCAGAAAAAATCACTTGCTGACCAATTGAATTTAAAGACTAGACAAATTGAAGTTTGGTTTCAAAATAGAAGAGCAAGGACGAAGCTGAAGCAGACAGAAGTAGATTATGAGTTATTGAAAAAACATTGTCAAAATCTAAGTGATGAGAACAGAAGATTGAAGAAGGAATTGCAAGAACTCAAACTTGTACAATCTCCATTATGCCCTCAACGTACTCCATCAAAACCCAAAATGTGTTCTTCTTGCGACCAGAAAGTACTGTTGAAGCTCAATGAACTAGAGAACAACAATTAA 678 0.3702 MEESDHDHEECNTGLCLGLGGGHVAKKEKKQKLVNKPLMACFDLAFELSPKGEAMNVYNNNHNNMKKKKGERLSLERQQNYPNVTSSTDSENNNNNNNNDSRKKLRLTKEQSTILENTFKLHNTLNPVQKKSLADQLNLKTRQIEVWFQNRRARTKLKQTEVDYELLKKHCQNLSDENRRLKKELQELKLVQSPLCPQRTPSKPKMCSSCDQKVLLKLNELENNN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05047 225 CDD homeodomain 102 159 IPR001356 GO:0003677
Trre16g05047 225 SUPERFAMILY Homeodomain-like 82 159 IPR009057 -
Trre16g05047 225 ProSiteProfiles 'Homeobox' domain profile. 98 158 IPR001356 GO:0003677
Trre16g05047 225 SMART HOX_1 100 162 IPR001356 GO:0003677
Trre16g05047 225 Gene3D - 94 163 - -
Trre16g05047 225 Coils Coil 150 191 - -
Trre16g05047 225 MobiDBLite consensus disorder prediction 80 105 - -
Trre16g05047 225 ProSitePatterns 'Homeobox' domain signature. 133 156 IPR017970 GO:0000981|GO:0006355
Trre16g05047 225 Pfam Homeodomain 102 156 IPR001356 GO:0003677
Trre16g05047 225 SMART halz 158 200 IPR003106 GO:0006355|GO:0043565
Trre16g05047 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 214 - -
Trre16g05047 225 MobiDBLite consensus disorder prediction 80 101 - -
Trre16g05047 225 Pfam Homeobox associated leucine zipper 158 189 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05047 Trre-Chr16 54175225 54176742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05047 83 212 Homeobox Transcription Factor Family AT3G60390 56.296 8.08e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre16g05047 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05047 K09338 - gmx:100812222 229.18