Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05044 ATGCCTCGAAGATTACTTCAACCCCAAGAAACACCTCCTTCATCTTCATCCTCTTCCGCGCCACACCACCGCTCTGAAGCTTTGTTCTTTTTCCTTGGAGGGATTGTAGTGCTAATCATATTGCTCATTATTATCTTTGTATGCTGGAAGCGTATTAAACGCGCCCCAGCAGAATTACCGGAGAAAACAGCTTCACCACCAAATCAGACTCAGAAGCATGCAGAAGATGAAATGATGAAGAAAATTGTCCCAACTGATCAACAGTCAGGATTCATGGAGTTCATTAGTGGGAACCTTAGGACAATTAGCTACTTTGATTTCCAGACATTGAGAAAGGCCACGAAGAATTTTCATCGCAGAAATCTTCTTGGAAGTGGTGGATTTGGCCCTGTCTATCAGGGAAAGTTGGTAGATGGAAGGGTAGTTGCTTGTAAGAAACTGTCTCTTGACAAATCTCAGCAAGGAGAAAGAGAATTTCTAGCAGAAGTGAGAATGATCACAAGCATCCAGCACAAAAATCTTGTTCGCCTTCTCGGATGTTGCTCAGATGGACCTCAAAGGATACTTGTGTATGAATACATGAAGAACAAAAGTTTGGACCTCTTTATACACGGGAAGAGCGATGAATTATATCTTAATTGGAGCACTAGATTCCAAATTATTCTTGGAGTAGCGCGGGGATTGCAATACCTTCACGAGGATTCGCATGTAAGAATTGTTCACCGAGATATCAAAGCAAGCAACATTCTTCTTGACGAAAAGTTTCAACCGAGGATCGGAGATTTTGGACTAGCTAGGTTTTTCCCCGAAGACCAAGCTTACCTTAGCACTCAATTTGCCGGAACATTAGGTTATACGGCTCCTGAATATGCTATTAGAGGAGAACTGTCTGAAAAGGCAGATATCTATAGTTTTGGAGTTCTTGTGCTTGAAGTAATCAGCTGTAGAAAAAACACAGATCTTACTTTACCATCAGATATGCAGTACCTCCCTGAATATGCATGGAAACTTTATGAGAATTCAATGGTGATGGATCTTATAGATCCAAAGCTGAGAGAAAAAGGATATGTAGAAAAAGATGTTATGCAAGCATTCCATGTGGCTTTTTTATGCCTTCAACCACATCCAGATTTAAGACCTGCAATGTCACAAATTGTAGCAATGTTGACATTTAAAATTGATATGGTTACAACACCAATGAGGCCGGCTTTCCTTGATCGAAGGCGCGTAATGGATGATGAAAACCATTCTTGGGAAGTTATATCTGAGGTTTTACAAACTCCTGTAGCTAGTGATTCTATGTTGTAA 1308 0.406 MPRRLLQPQETPPSSSSSSAPHHRSEALFFFLGGIVVLIILLIIIFVCWKRIKRAPAELPEKTASPPNQTQKHAEDEMMKKIVPTDQQSGFMEFISGNLRTISYFDFQTLRKATKNFHRRNLLGSGGFGPVYQGKLVDGRVVACKKLSLDKSQQGEREFLAEVRMITSIQHKNLVRLLGCCSDGPQRILVYEYMKNKSLDLFIHGKSDELYLNWSTRFQIILGVARGLQYLHEDSHVRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEVISCRKNTDLTLPSDMQYLPEYAWKLYENSMVMDLIDPKLREKGYVEKDVMQAFHVAFLCLQPHPDLRPAMSQIVAMLTFKIDMVTTPMRPAFLDRRRVMDDENHSWEVISEVLQTPVASDSML 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05044 435 FunFam Cysteine-rich receptor-like protein kinase 10 81 193 - -
Trre16g05044 435 SMART serkin_6 117 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05044 435 MobiDBLite consensus disorder prediction 1 21 - -
Trre16g05044 435 ProSiteProfiles Protein kinase domain profile. 117 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05044 435 Gene3D Phosphorylase Kinase; domain 1 77 193 - -
Trre16g05044 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Trre16g05044 435 Gene3D Transferase(Phosphotransferase) domain 1 194 398 - -
Trre16g05044 435 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 194 399 - -
Trre16g05044 435 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 412 - -
Trre16g05044 435 SUPERFAMILY Protein kinase-like (PK-like) 99 392 IPR011009 -
Trre16g05044 435 CDD STKc_IRAK 123 390 - -
Trre16g05044 435 Pfam Protein tyrosine and serine/threonine kinase 120 389 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05044 Trre-Chr16 54141549 54144024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05044 105 405 Receptor kinase-like Gene Family AT1G56120 49.502 9.21e-98 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g05044 PK_Tyr_Ser-Thr 8.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05044 - - ccaj:109792436 649.432