Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05038 ATGTTACCACCACCTTATCACTCTTCTCTTATGTCTTTAGATCTTAATATTGAAGATCAAAACCATGACCAACTTTCTAGTCCAAATTCTTCTAATTCATTTTCTTCTCTATCATCTTCTTCATCATATCCTATTCTCTTAGACCAGCCAGATCAAGTTCAACAACCATCTTTTTATTTCCAAACAAACCACTTTCCAAATGATCATGAAGAGGTTGAAAAGATTAATAGTATGGTCTCAAGTGGATCATGTGATAATAATTCAACTGTTGAAAACCATGAGATCATCAAAAGTAAACACAAGCTGACAATTAGATGGAAGAAAGAAGAAATTGATAAGAATAATATTGAAGAAGCTGATCATCATCATCATGATGGTAGTTCATCCGTGAAGTGGATGTCTTCAAAGATGAGAATGATGAAGAAGATGATAGTTTCTGATCAAACTAGTGGTAGTTCTTCTAACATAGCAAGCAATAATTCAAAGCAAAAATTTGAAGATCAAAAGCAACCACTTTCACCACTAGGAAGCAGCACCACCAACAATTTTTCAAATCAAATTAGGGTTTGTTCTGATTGCAACACCACTAAGACCCCTCTTTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAACGCATGTGGGATTAGACAAAGGAAAGCAAGACGTGCCTTGGCATTGGCAGCAGCAGCGGCAAATGGTACAACAGTAACTGCTGATCAGGCATCTTCTGTGAAGAGAAAAAAGTTGCAGAAGAAAAAAGAGAATAAGTCCAAAATTGATTGTTCTACACATTTGAAAAAGAAGACCAAGTTTGAATCATCATCAGAAGAACAATCTCATCAAAGTAAAAAAGAGTTCATAACTTTTGAAGATTTGAGATTAAGTTTGAGTAAGAATTTGTCTGTTCAACAAGTTTTCCCTCAAGATGAAAAGGAAGCTGCTATTCTTCTCATGGCTTTATCTTATGGACTAGTCCATGGTTGA 990 0.3596 MLPPPYHSSLMSLDLNIEDQNHDQLSSPNSSNSFSSLSSSSSYPILLDQPDQVQQPSFYFQTNHFPNDHEEVEKINSMVSSGSCDNNSTVENHEIIKSKHKLTIRWKKEEIDKNNIEEADHHHHDGSSSVKWMSSKMRMMKKMIVSDQTSGSSSNIASNNSKQKFEDQKQPLSPLGSSTTNNFSNQIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALALAAAAANGTTVTADQASSVKRKKLQKKKENKSKIDCSTHLKKKTKFESSSEEQSHQSKKEFITFEDLRLSLSKNLSVQQVFPQDEKEAAILLMALSYGLVHG 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05038 329 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 186 224 - -
Trre16g05038 329 ProSitePatterns GATA-type zinc finger domain. 190 215 IPR000679 GO:0006355|GO:0043565
Trre16g05038 329 MobiDBLite consensus disorder prediction 244 263 - -
Trre16g05038 329 Pfam GATA zinc finger 190 223 IPR000679 GO:0006355|GO:0043565
Trre16g05038 329 CDD ZnF_GATA 189 221 IPR000679 GO:0006355|GO:0043565
Trre16g05038 329 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 12 329 - -
Trre16g05038 329 MobiDBLite consensus disorder prediction 145 181 - -
Trre16g05038 329 Gene3D - 181 261 IPR013088 GO:0006355|GO:0008270
Trre16g05038 329 ProSiteProfiles GATA-type zinc finger domain profile. 184 220 IPR000679 GO:0006355|GO:0043565
Trre16g05038 329 FunFam GATA transcription factor 21 184 263 - -
Trre16g05038 329 SMART GATA_3 184 235 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05038 Trre-Chr16 54109634 54111132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05038 97 329 C2C2-Gata Transcription Factor Family AT4G26150 45.161 2.71e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre16g05038 GATA 5.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05038 - - mtr:25494244 356.295