Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05037 ATGAATATGTTACCACCACCTTATCACTCTTCTCTTATGTCTTTAGATCTTAATATTGAAGATCAAAACCATGACCAACTTTCTAGTCCAAATTCTTCTAATTCATTTTCTTCTCTATCATCTTCTTCATCATATCCTATTCTCTTAGACCAGCCAGATCAAGTTCAACAACCATCTTTTTATTTCCAAACAAACCACTTTCCAAATGATCATGAAGAGGTTGAAAAGATTAATAGTATGGTCTCAAGTGGATCATGTGATAATAATTCAACTGTTGAAAACCATGAGATCATCAAAAGTAAACACAAGCTGACAATTAGATGGAAGAAAGAAGAAATTGATAAGAATAATATTGAAGAAGCTGATCATCATCATCATGATGGTAGTTCATCCGTGAAGTGGATGTCTTCAAAGATGAGAATGATGAAGAAGATGATAGTTTCTGATCAAACTAGTGGTAGTTCTTCTAACATAGCAAGCAATAATTCAAAGCAAAAATTTGAAGATCAAAAGCAACCACTTTCACCACTAGGAAGCAGCACCACCAACAATTTTTCAAATCAAATTAGGGTTTGTTCTGATTGCAACACCACTAAGACCCCTCTTTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAACGCATGTGGGATTAGACAAAGGAAAGCAAGACGTGCCTTGGCATTGGCAGCAGCAGCGGCAAATGGTACAACAGTAACTGCTGATCAGGCATCTTCTGTGAAGAGAAAAAAGTTGCAGAAGAAAAAAGAGAATAAGTCCAAAATTGATTGTTCTACACATTTGAAAAAGAAGACCAAGTTTGAATCATCATCAGAAGAACAATCTCATCAAAGTAAAAAAGAGTTCATAACTTTTGAAGATTTGAGATTAAGTTTGAGTAAGAATTTGTCTGTTCAACAAGTTTTCCCTCAAGATGAAAAGGAAGCTGCTATTCTTCTCATGGCTTTATCTTATGGACTAGTCCATGGTTGA 996 0.3584 MNMLPPPYHSSLMSLDLNIEDQNHDQLSSPNSSNSFSSLSSSSSYPILLDQPDQVQQPSFYFQTNHFPNDHEEVEKINSMVSSGSCDNNSTVENHEIIKSKHKLTIRWKKEEIDKNNIEEADHHHHDGSSSVKWMSSKMRMMKKMIVSDQTSGSSSNIASNNSKQKFEDQKQPLSPLGSSTTNNFSNQIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALALAAAAANGTTVTADQASSVKRKKLQKKKENKSKIDCSTHLKKKTKFESSSEEQSHQSKKEFITFEDLRLSLSKNLSVQQVFPQDEKEAAILLMALSYGLVHG 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05037 331 ProSiteProfiles GATA-type zinc finger domain profile. 186 222 IPR000679 GO:0006355|GO:0043565
Trre16g05037 331 Pfam GATA zinc finger 192 225 IPR000679 GO:0006355|GO:0043565
Trre16g05037 331 SMART GATA_3 186 237 IPR000679 GO:0006355|GO:0043565
Trre16g05037 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 226 - -
Trre16g05037 331 ProSitePatterns GATA-type zinc finger domain. 192 217 IPR000679 GO:0006355|GO:0043565
Trre16g05037 331 MobiDBLite consensus disorder prediction 246 265 - -
Trre16g05037 331 FunFam GATA transcription factor 21 186 265 - -
Trre16g05037 331 CDD ZnF_GATA 191 223 IPR000679 GO:0006355|GO:0043565
Trre16g05037 331 Gene3D - 183 263 IPR013088 GO:0006355|GO:0008270
Trre16g05037 331 MobiDBLite consensus disorder prediction 147 183 - -
Trre16g05037 331 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 14 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05037 Trre-Chr16 54109628 54111132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05037 99 331 C2C2-Gata Transcription Factor Family AT4G26150 45.161 3.02e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre16g05037 GATA 5.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05037 - - mtr:25494244 358.607