Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05032 ATGGATATGGTTTTAGCACTGATGTTGCAGCTGTTGAAGTTCTGCATCATCTTTGGCTTTGCAGTGGCATCCAAAGGACTTGTTGTATCGCCATCTCCAGAAAACTTACATGTGTATCCATCCCCTATTGAAACACCTGGTTCTCCTAGCTCTCCAACAGTACACAATGGGCCATTCTCTCATCCTCCAATAGCATTATCACCACCATCTGTAAAAGCAAGTCAACCACCAAGGAAAGCTCCTGTTGTCTCAACACCAACTGCCCCAGCATCTATTCCCCCTCCTATATCAACTCCTTCAAGAATCATCAATCCGGGACATGGAAGAGCACCGATTTCTGCACCTTTGTACAAAACACCAAAGCCATATGTAATACATTCTCCTGCATTGACACCTTCAGCCTCAAATTATAAACATCATCATTCAAGACACGTAATTACCATTCCTGCTCCTGCGTCATCGTATATGGTTTCTCCTCCCATTTCAAGATCCCGAGATAGAGCAATTTCTCCCTCATTATCACCAACAACAGGTGGAAAGAGACATCATTTTCCACTACCATTGAACTCAGACTGTTTATCAACTGTCTGCACAGAGCCTTATGTAACTTCTCCTCTTGGAGCAACTTGCAGATGTGTCTGGCCCATACATGTCGGTCTTCGCCTCAGCGTTTCTCTTTATACCTTATTTCCTTTGGTCTCGGAGCTGGTTTCTGAACTTTCCAGTGGGATTTTCATGAAGCAAAGTCAAGTTAGAATTACGGGAGCCAGTGCAGCTAACCAGCAACCTGATAAAACTGTTGTCCTTATAGAATTGGTGCCACTTGGGGAAAAGTTTGATAATACTACCGCCTTTCTGACTTCTGAAAGGTTTTGGCATAAAAAGGTTGTTATTAAAGCCTCCTACTTTGGATACTATGATGTTTTATATGTGAACTATCCAGGTTTACCTCCTTCTCCTCCTTTACCACCTTCAAGCATTAGCATTATAGATGGTGGTCCTTATTCCTCTGATGGCAATAATGGAAGGACAATAAAGCCCATTGGAGTTGACATACAGAAGAGGCAGAATAGAGACGATCTTAGCAAAGGCTTTATTGCCATTGTTGCTGTTTCAATTTTTGTAGCATTTATTTTATGTACTGCTGCTGCCTATGTCATGTTCAAATTCAGAGTTCATGTTGGTCAAACAACATCGACTCCACGACTTTCACATCCTTCTATTGCCAAAGCATCAGTTACCGCTACTGGATCATTAATTGGAGACGGAGGGATTGGTTCGGTTTCCTCTTTATTTGAATCTAGCATTGCTGCTTATACAGTGTGTGCTAAAACTTTCAGTATGAATGACATTGAAAAAGCTACTGATAATTTTCATGCTTCAAGAATACTTGGAGAAGGTGGTTTTGGTCTTGTTTACAGTGGTGTCCTCGGAGATGGAACAAAAGTGGCAGTCAAGGTTCTAAAAAGGAGGGAGGATCATCAAGGTGATCGCGAATTCTTAGCTGAAGTTGAGATGCTTAGTCGTCTTCACCATAGAAATCTGGTCAGGTTGATTGGTATATGTGCTGAAGAGGACAGCTTCCGCTGCTTGGTTTATGAACTCATTCCAAATGGCAGCTTGGAATCTCATTTACATGGGGTTGACAGGGAAAAGTGCACACTTGATTGGGGTGCTAGGATGAAGATAGCTCTTGGTGCAGCTCGTGGTTTAGCTTATCTGCATGAAGATTCAAGTCCTTGTGTTATACATAGGGACTTCAAGTCTAGCAACATATTGTTGGAAGATGATTTTAGTCCAAAAGTATCTGATTTTGGATTAGCCTGGACCGCTACAGATGAGGAAAATAGACACATATCAACGCGTGTTGTGGGAACTTTTGGTTACGTGGCTCCGGAGTATGCAATGACAGGTCATCTTCTTGTTAAGAGTGATGTTTACAGCTATGGCGTTGTTCTTCTAGAGCTTTTGACAGGAAGAAAACCTATAGACATGTCACAAGCTCCGGGTCAAGAAAATCTCGTTGCTTGGGCTCGTCCATTTCTCACAAGTAAAGAAGGATTGGATGAAATTATAGATCCATCTATAGGACTCGATGTTCCTTTCGATAGTGTTGCAAAAGTAGCAGCCATTGCTTCAATGTGTGTGCAATCAGAAGTATCGAACCGTCCATTCATGAGTGAAGTTGTTCAGGCTTTAAAACTTGTATGCAATGAATGCGAAGAAGCAAAAGAAGATCATGGTTCAAGAAGCTCTAGCCAAGAACACGAGGATTTATCTGTTGATGATATTGAAAGAGGCTTATCAGCATCAGAATTTTTCAATTCACCAAGTAGAGTTGGAAGAATGGAGTATGAAACATTTAGAAGAAAGTCTTATTCAGGTCCTATGGGAAATGGAAGAAGCAAACAGTTATGGGAGATAATGAGAAGGCTTTCTGGTGGCAGTGTCAGTGATTGTGAACATGAAACTATATGA 2478 0.4153 MDMVLALMLQLLKFCIIFGFAVASKGLVVSPSPENLHVYPSPIETPGSPSSPTVHNGPFSHPPIALSPPSVKASQPPRKAPVVSTPTAPASIPPPISTPSRIINPGHGRAPISAPLYKTPKPYVIHSPALTPSASNYKHHHSRHVITIPAPASSYMVSPPISRSRDRAISPSLSPTTGGKRHHFPLPLNSDCLSTVCTEPYVTSPLGATCRCVWPIHVGLRLSVSLYTLFPLVSELVSELSSGIFMKQSQVRITGASAANQQPDKTVVLIELVPLGEKFDNTTAFLTSERFWHKKVVIKASYFGYYDVLYVNYPGLPPSPPLPPSSISIIDGGPYSSDGNNGRTIKPIGVDIQKRQNRDDLSKGFIAIVAVSIFVAFILCTAAAYVMFKFRVHVGQTTSTPRLSHPSIAKASVTATGSLIGDGGIGSVSSLFESSIAAYTVCAKTFSMNDIEKATDNFHASRILGEGGFGLVYSGVLGDGTKVAVKVLKRREDHQGDREFLAEVEMLSRLHHRNLVRLIGICAEEDSFRCLVYELIPNGSLESHLHGVDREKCTLDWGARMKIALGAARGLAYLHEDSSPCVIHRDFKSSNILLEDDFSPKVSDFGLAWTATDEENRHISTRVVGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPIDMSQAPGQENLVAWARPFLTSKEGLDEIIDPSIGLDVPFDSVAKVAAIASMCVQSEVSNRPFMSEVVQALKLVCNECEEAKEDHGSRSSSQEHEDLSVDDIERGLSASEFFNSPSRVGRMEYETFRRKSYSGPMGNGRSKQLWEIMRRLSGGSVSDCEHETI 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05032 825 FunFam receptor-like serine/threonine-protein kinase ALE2 429 535 - -
Trre16g05032 825 FunFam Receptor-like serine/threonine-protein kinase ALE2 536 755 - -
Trre16g05032 825 MobiDBLite consensus disorder prediction 40 104 - -
Trre16g05032 825 CDD STKc_IRAK 464 734 - -
Trre16g05032 825 Pfam Protein tyrosine and serine/threonine kinase 460 733 IPR001245 GO:0004672|GO:0006468
Trre16g05032 825 MobiDBLite consensus disorder prediction 157 177 - -
Trre16g05032 825 Gene3D Phosphorylase Kinase; domain 1 432 535 - -
Trre16g05032 825 ProSitePatterns Protein kinases ATP-binding region signature. 464 486 IPR017441 GO:0005524
Trre16g05032 825 SUPERFAMILY Protein kinase-like (PK-like) 439 733 IPR011009 -
Trre16g05032 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Trre16g05032 825 Gene3D Transferase(Phosphotransferase) domain 1 536 760 - -
Trre16g05032 825 MobiDBLite consensus disorder prediction 157 181 - -
Trre16g05032 825 PANTHER OS01G0750732 PROTEIN 187 762 - -
Trre16g05032 825 ProSiteProfiles Protein kinase domain profile. 458 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05032 Trre-Chr16 54060146 54064435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05032 63 824 Receptor kinase-like Gene Family AT5G56890 54.491 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trre16g05032 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05032 - - psat:127138624 1109.75