Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05030 ATGGCCCCTCGAATCCTTCTCTGCGGCGACGTTTTTGGCCGCCTTAACCAACTCTTCAAGCGCGTCTCATCGGTTAACAAATCGGCGGGTCCATTCGACGCGCTCTTGTGCGTTGGCCAATTCTTCCCTGACTCACCGGACCTGCTTGACGAGTTCATGGCATACATTGAAGGTGGATCCCACATTCCTCTCCCAACTTACTTCATCGGCGATTACGGTGTCGCCGCCCCTAAAATTTTGTTGGCGGCTTCTAAAGATTCTGCCAACCTTGGTTTCAAGATGGACGGCTTGAAGGTTTGCGATAATTTGTTTTGGTTGAAAGGCAGTGGCAAATTCAACCTATTCGGGTTATCTGTCACCTATTTATCTGGTAGGAAATCGTCGAATGTTCAGCAGTTTGGAACTTATAGTGAAGATGATGTTGATGCTCTGCGTGCGATAGCTGAAGAACCTGGAGTTATTGATTTTGGGGTCACAAATGGAGTAGCTACTTCAGATATTCCTGCTGGATTCTCAGATTCTACCGGCAGCGATTCAACCATATCAGAGTTAGTACAAGAGATTAAACCACGCTATCATATCGCTGGTTCTAAAGGTATATACTATGCCCGTGAACCGTATTCCAATTTTGATGCCGTCCATGTTACACGTTTCATAGGGCTTGCGTCTGTTGGAAATAGAGATAAGCAGAAATTTATTCATGCAATTTCTCCAACACCTGCATCCACCATGTCGTCAACTGAGATTGCCATGAAAACAACAAATACCACCTTATCACCATACACATCTGCGGAGGCAAAAACTTCTCCAAAGGATACTGTAAAGAGATCCAGTGACGGTATCTCTGATTCTCAAGATTGGAGATATGATGTTTCACAAAAGCGACAGAAATATGACGCTTTGTGTTTCAAATTTGTATCTTCTGACTCTTGTCCACGGGGAGAGACATGCAATTTTCGACATGACACAGATGCAAGGGAGCACTGCTTGAGAGGTGTTTGTTTTGAGTTTTTGAACAAGGGAAAATGTGAAAGGGTTCCAGATTGCCGCTTTAGGCACAGCTTGCAGGATGAAGGTGATAAGCATCCTTCCAGGAGGCCTGGATCAGAAAAGACAAGGTCTAGCAGGTCAAGAGAATGTTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTATCTAGCACTTGCTAAAGGCCCACTTGTTGAAGACCATGTGCTGATAATACCTGTTGAGCATATGCCAAATACTTTATTTTTGTCTTCTGAATCTGATGCTGAGCTCTTAAGGTTTCAGAACAGTCTCAAGAGATATTTCAAGAGCCAAGAAAAGGAAGTCATATTTTTTGAGTGGGCTTCCATACGTGGTACTCACGCCAATCTTCAGGTCATTCCCATTCCATCTTCCAAAGCAGTATTGGTTGAAAAAGCATTTAACTTAGCTGCACAAAAGTTGGAATTTAAATTTGTGACAAAGAAATTTGATAGTATTTCTGATGGAAGAAAGTTTTTGAAGACGCAAATCGATGGGAATTCAAGCTTGTTCTATGCTGAAATACCAGGAGGTACAATTTTGCTGCACCATGTTGATGAGAAAGACACATTTCCTGTCCAATTTGGACGTGAGGTTCTGGCCGGGTTGCTTAACATGGCAGATAATGCAGATTGGAGGAATCGTAAACATAACAAAGATGAAGAGATGAAAATTGTGGAAGATTTCAAGGACCGATTTCAAGAATATGATCCAAACCATTGA 1782 0.4259 MAPRILLCGDVFGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPDLLDEFMAYIEGGSHIPLPTYFIGDYGVAAPKILLAASKDSANLGFKMDGLKVCDNLFWLKGSGKFNLFGLSVTYLSGRKSSNVQQFGTYSEDDVDALRAIAEEPGVIDFGVTNGVATSDIPAGFSDSTGSDSTISELVQEIKPRYHIAGSKGIYYAREPYSNFDAVHVTRFIGLASVGNRDKQKFIHAISPTPASTMSSTEIAMKTTNTTLSPYTSAEAKTSPKDTVKRSSDGISDSQDWRYDVSQKRQKYDALCFKFVSSDSCPRGETCNFRHDTDAREHCLRGVCFEFLNKGKCERVPDCRFRHSLQDEGDKHPSRRPGSEKTRSSRSRECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPNTLFLSSESDAELLRFQNSLKRYFKSQEKEVIFFEWASIRGTHANLQVIPIPSSKAVLVEKAFNLAAQKLEFKFVTKKFDSISDGRKFLKTQIDGNSSLFYAEIPGGTILLHHVDEKDTFPVQFGREVLAGLLNMADNADWRNRKHNKDEEMKIVEDFKDRFQEYDPNH 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05030 593 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 592 IPR040194 -
Trre16g05030 593 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Trre16g05030 593 MobiDBLite consensus disorder prediction 254 268 - -
Trre16g05030 593 CDD MPP_CWF19_N 6 224 - -
Trre16g05030 593 MobiDBLite consensus disorder prediction 254 281 - -
Trre16g05030 593 ProSiteProfiles Zinc finger C3H1-type profile. 333 356 IPR000571 GO:0046872
Trre16g05030 593 Gene3D - 374 502 IPR036265 -
Trre16g05030 593 FunFam Zinc finger CCCH domain-containing protein 59 356 482 - -
Trre16g05030 593 Gene3D - 294 358 - -
Trre16g05030 593 Pfam Protein similar to CwfJ C-terminus 2 501 590 IPR006767 -
Trre16g05030 593 Pfam Protein similar to CwfJ C-terminus 1 371 487 IPR006768 -
Trre16g05030 593 SMART c3hfinal6 330 355 IPR000571 GO:0046872
Trre16g05030 593 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Trre16g05030 593 SUPERFAMILY HIT-like 379 476 IPR036265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05030 Trre-Chr16 54051868 54057735 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre16g05030 CwfJ_C_1 1.8e-38 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05030 K24939 - gmx:100782106 1014.99