Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05020 ATGGCGGTGTCTCACGGTGGATACGACGGTGAAATCGGTGGCTCTAGGTCTTATCTAATCCCATCAGTAAAACCAGAGTTAATCGATGATAGTGCAGGTTCAAGTTCTTGTCAATACGACGACGTTTTAAGCGAAAGAAAAGACTCAGAACTAACCGTAGAAGAAGGTGCTACAGCTTCTCTTGCTATTCAAATCAAAGAAGAGGTTGTTGAAGACGAAGGTGCTAACACTTCATCTTCTTCGATCAAGTTTCCAAAACCAATGGAAGGGTTACACGATGCTGGTCCACCACCGTTTCTCAAGAAAACGTATGAAATGGTGGAGGATCCGGAAACTGACCCGATTGTTTCCTGGAGTGCTTCTCGTGATAGTTTCATTGTTTGGGACTCTCATGAATTCTCCAAAATCCTTCTTCCAAAGTACTTTAAGCACAATAATTTCTCCAGCTTTATTCGTCAGCTAAACACCTATGGGTTTAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCAAATGAAGGGTTTCAAGGAGGGAAAAAACATTTGTTGAAGACCATAAGAAGGAGAAGTAAGTATAACAAAGTGCACCAAGGAGGATTCAATTTGATGAAGCCTCCTGTCGAATCTGAAGTGGAGAAACTGAAGAAGGATCAGAACATGTTAAAATTGGAAATTCTGAAGCTAAGGCAGCAACAAGAGAATTCAAATATTCAACTCACAAATGTTCAAGAACGAGTTCGGCGTGCAGAATTAAAGCAATACCAGATGATGTATTTCCTCACCAAAATGGCCAAAAGGCCAATGTTTATGGAGCAGTTAATCCAAAAGATTAAGCGGAATAGAGAAGTTGATGGTAGTATTGACATGGTTAAAAGACCTAGATTGCTTGGAACACAAGGTACTAGTGTAGACTATAGGTCTCAGGGTTGTCAACAATTTGCTACTTTGGAATCTGAATTGAATGGACTTTTTCCTGAAAATATGAACACTGGTAGAATGGAACCACCACCAGTTCCAACTCGAATGGAAAATGGATTGTGTGGCACTTTGCATGAATTGAAGGGTTGTGGTGGTTCTAGACAAAGTGTGCAAGATGTATCTTCTGCTTATCATGTTATGTCAGAGAATCTATTGGGTGAAAATTCTGTTGATGAAGAAATGGATGTGAATGACTCCAATATCTATCTTGAATTCGAGGATTTGATAACTAAGCCAACAGATTGGGGTGGATCTGCAAGTGGATTGGTGGGACAAACTAGTTAA 1260 0.4032 MAVSHGGYDGEIGGSRSYLIPSVKPELIDDSAGSSSCQYDDVLSERKDSELTVEEGATASLAIQIKEEVVEDEGANTSSSSIKFPKPMEGLHDAGPPPFLKKTYEMVEDPETDPIVSWSASRDSFIVWDSHEFSKILLPKYFKHNNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKTIRRRSKYNKVHQGGFNLMKPPVESEVEKLKKDQNMLKLEILKLRQQQENSNIQLTNVQERVRRAELKQYQMMYFLTKMAKRPMFMEQLIQKIKRNREVDGSIDMVKRPRLLGTQGTSVDYRSQGCQQFATLESELNGLFPENMNTGRMEPPPVPTRMENGLCGTLHELKGCGGSRQSVQDVSSAYHVMSENLLGENSVDEEMDVNDSNIYLEFEDLITKPTDWGGSASGLVGQTS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05020 419 Coils Coil 210 251 - -
Trre16g05020 419 FunFam Heat shock transcription factor 1 92 189 - -
Trre16g05020 419 ProSitePatterns HSF-type DNA-binding domain signature. 138 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre16g05020 419 Gene3D - 92 189 IPR036388 -
Trre16g05020 419 MobiDBLite consensus disorder prediction 27 50 - -
Trre16g05020 419 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 85 305 IPR027725 -
Trre16g05020 419 SMART hsfneu3 95 188 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre16g05020 419 Pfam HSF-type DNA-binding 99 188 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre16g05020 419 PRINTS Heat shock factor (HSF) domain signature 99 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre16g05020 419 PRINTS Heat shock factor (HSF) domain signature 150 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre16g05020 419 PRINTS Heat shock factor (HSF) domain signature 137 149 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre16g05020 419 SUPERFAMILY "Winged helix" DNA-binding domain 95 188 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05020 Trre-Chr16 53909138 53911024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05020 85 297 HSF AT2G26150 53.182 2.16e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre16g05020 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05020 K09419 - gmx:100818430 535.028