Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05007 ATGGCTGGACTTGCACCCGAGGGGTCACAGTTCGATGCTGGCAAATTTGACAAAAAAATGAATGAATTAATTGGTGATGGAGAGGATTTCTGGACTGTTTCTGATGAGTCTTATGATAGTTTTGATGCGATGGGCTTGCAAGAGAATCTCCTCAGGGGAATTTATGCATATGGTTTTGAAAAGCCATCAGCCATTCAGCAAAGGGGAATAGTCCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAGTCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGTGTTCTGCAGCAACTTGACTACAGTTTGACTCAATGCCAAGCCTTGGTTTTAGCTCCAACTCGTGAGCTTGCTCAGCAGATCGAGAAGGTTATGCGGGCTCTTGGAGATTATCTAGGTGTTAAGGTGCATGCTTGTGTGGGAGGTACCAGTGTTCGTGAAGACCAACGTATTCTATCAAGTGGTGTTCATGTTGTGGTTGGTACTCCTGGTCGTGTGTTTGACATGCTGCGTAGACAGTCTCTTCACCCGGATAACATCAAGATGTTTGTGTTGGATGAAGCCGATGAGATGCTGTCTCGAGGTTTCAAAGATCAGATCTACGATATATTTCAACTGCTGCCAAGTAAGATTCAGGTGGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCACTTGAGATCACAAGGAAGTTTATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAGCTGACCTTGGAGGGTATTAAACAGTTTTATGTCAATGTTGATAAAGAGGAATGGAAGCTGGACACACTCTGTGATCTTTACGAGACATTAGCCATCACTCAGAGTGTCATTTTCGTAAACACCAGAAGGAAAGTTGATTGGTTGACTGACAAGATGCGAAGCCGAGACCATACTGTCTCAGCTACTCATGGAGACATGGATCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCAGGGTCTTCCCGTGTTTTAATAACTACTGATCTCTTGGCACGTGGCATTGATGTCCAACAAGTGTCTTTGGTTATTAATTATGATCTCCCTACACAGCCTGAGAACTATCTCCACCGTATTGGTCGTAGTGGAAGGTTTGGTAGAAAAGGTGTTGCCATTAACTTTGTCACGACTGATGATCAAACAATGCTGCAGGATATCCAGAAGTTTTACAACGTGATAGTCGAGGAGCTGCCATCAAATGTTGCTGAGCTACTCTGA 1239 0.4439 MAGLAPEGSQFDAGKFDKKMNELIGDGEDFWTVSDESYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLHPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDQTMLQDIQKFYNVIVEELPSNVAELL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05007 412 Gene3D - 30 247 IPR027417 -
Trre16g05007 412 CDD SF2_C_DEAD 252 382 - -
Trre16g05007 412 FunFam Eukaryotic initiation factor 4A-III 247 412 - -
Trre16g05007 412 Pfam Helicase conserved C-terminal domain 265 373 IPR001650 -
Trre16g05007 412 Gene3D - 248 412 IPR027417 -
Trre16g05007 412 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 240 IPR014001 -
Trre16g05007 412 SMART helicmild6 292 373 IPR001650 -
Trre16g05007 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 393 IPR027417 -
Trre16g05007 412 FunFam Eukaryotic initiation factor 4A-II 27 246 - -
Trre16g05007 412 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 39 67 IPR014014 GO:0003724
Trre16g05007 412 CDD DEADc_EIF4A 43 241 - -
Trre16g05007 412 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 251 412 IPR001650 -
Trre16g05007 412 PANTHER RNA HELICASE 35 396 - -
Trre16g05007 412 SMART ultradead3 58 255 IPR014001 -
Trre16g05007 412 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 186 194 IPR000629 -
Trre16g05007 412 Pfam DEAD/DEAH box helicase 64 225 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05007 Trre-Chr16 53830947 53833877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05007 1 412 Eukaryotic Initiation Factors Gene Family AT1G72730 88.406 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05007 K03257 - mtr:25494213 775.778