Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05006 ATGTTGGGTGATGCCACAAACTGGAACGAAGATGCATATAGAGAAACCGTATTGAAAGAAAGAGAGATTCAAACACAAACCGTTTTCAGAACAGCTTGGGCTCCTTCTCAATCTCAATCTCAAACCCCTAATCTCAATTCTCTCATCGTTGCCTCTAGTGACGGTTCCATCGCCTCTTACTCCATCCCTTCCACCATCTCTGCTTCCAAGCTCAAAAATCCATTTGGTTTTATCAATACTGATGAGGATAATTTATTGGCTGAGCCAGATTGCTTCTTTCAAGCGCATCATGGACCTGCATATGATGTCAAATTCTATGGTGATGATGAAAATGCTCTGTTGATCAGTTGTGGTGATGATGGGCGGATTCAAGGATGGAGATGGAAGGAACTTACAAGCTCAAAATATAATATTTCTTCAGAAGGAAATGATATCAAGCCTATCCTTGATGCAGTAAATCCTCAACATAAAGGTCCTTGGGGTTCACTTTCACCTCTCCCTGAGAATAATGCTATTGCCGTTAATACTCAGGTGGGATCTGTTTTTGCTGCGTCCGGCGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAATTAAAAATGGTATTCAAGGGTCATTCTGATTACTTGCATTGTATTGTTGCCCGCAACTCATCCAATCAGATCATAACAGGGTCAGAGGATGGGACAACACGAATTTGGGATTGCAAAAGTGGAAAGTGTGTCCAAGTGATTGATCCAGCAAAACATTTGAAGTTAAAAGGACCTGTTTCATGGGTTGGCTCTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCATGCAGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTTCAGAGTGCACGTTAAATTTCTCCACTCAAGCTTCTGTACAAGACATGTTATTTGACAATAATCAGATTCTGACAGTTGGTGCAGATCCTATACTCAATCGCTTTGACATGAACGGTGTGATCCTTTCACAAATACCATGTGCTTCTCCGTCAGCTTTTTCGATCTCCTTACATCCAGCAGGGGTTATTGCTGTTGGAGGTTACGGATGTCTTGTGGATGTTGTCTCGCAATTTGGCAGCCACATGTGCACATTTCGTTGCCAATGTGTTTAG 1137 0.4222 MLGDATNWNEDAYRETVLKEREIQTQTVFRTAWAPSQSQSQTPNLNSLIVASSDGSIASYSIPSTISASKLKNPFGFINTDEDNLLAEPDCFFQAHHGPAYDVKFYGDDENALLISCGDDGRIQGWRWKELTSSKYNISSEGNDIKPILDAVNPQHKGPWGSLSPLPENNAIAVNTQVGSVFAASGDSCAYCWDVETGKLKMVFKGHSDYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCVQVIDPAKHLKLKGPVSWVGSVALDASESWLACSSGRNISLWNLPASECTLNFSTQASVQDMLFDNNQILTVGADPILNRFDMNGVILSQIPCASPSAFSISLHPAGVIAVGGYGCLVDVVSQFGSHMCTFRCQCV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05006 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 245 IPR001680 GO:0005515
Trre16g05006 378 SMART WD40_4 86 127 IPR001680 GO:0005515
Trre16g05006 378 SMART WD40_4 14 61 IPR001680 GO:0005515
Trre16g05006 378 SMART WD40_4 247 285 IPR001680 GO:0005515
Trre16g05006 378 SMART WD40_4 156 194 IPR001680 GO:0005515
Trre16g05006 378 SMART WD40_4 197 236 IPR001680 GO:0005515
Trre16g05006 378 SMART WD40_4 288 324 IPR001680 GO:0005515
Trre16g05006 378 Pfam WD domain, G-beta repeat 254 285 IPR001680 GO:0005515
Trre16g05006 378 Pfam WD domain, G-beta repeat 199 236 IPR001680 GO:0005515
Trre16g05006 378 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 377 IPR042626 -
Trre16g05006 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 236 - -
Trre16g05006 378 Gene3D - 8 364 IPR015943 GO:0005515
Trre16g05006 378 SUPERFAMILY WD40 repeat-like 41 364 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05006 Trre-Chr16 53819430 53825274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05006 124 241 Eukaryotic Initiation Factors Gene Family AT2G46290 27.119 5.70e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05006 - - gmx:100820024 659.062