Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05004 ATGTCTACACCAAGATCGGTTGCAGTTGCCGTCAGTGGCGGCTCCGGCGCCGCCAAAGGTAGCCGACGAGCTTTACAGTGGGCGATGGAGAATGTTGTTCCTCAAGCAGATAGACTCATTTTAGTTCACGTCATCCCTAGAATCACTTCAATTCCATCCCCAGGTGGAGGGTATATTCCCATTTCGGAAGAAGATGCGCATGCCTTTGCAGCTTATGTGCAGGATGTGAAACAGAAGTCCGAAGAAATCTTTGTTTCATTCAAAAAACTATGTGAACCAAACACGATAGAAACCTTTCTGCTAGAAGATGACAATCCTGCAAATGCACTTCTTAGCTTTATCTCGGAGTCTGGGGTTCAAATATTAGTGTTGGGTTCCGATGACTCAAATTTTATTACAAGGAAGCTAAAAGGACCTGGCATACCAACTACCATTCTAAGATGTGCTCCTGACAGCTGTGATGTATATGTTGTAGATAGAGATAAAATTGTATCAAAGTTAGCTGATTCTTCATCTTCACATTCTCATGAGGAAGGACCAAGGTACATCATGTCTAATCACGTAAATAAATCAGACAATGGTGCTGGCGTTGGTGGACAAATGTCTGGAATCAGTGCATCCTCAGCAGAACTTAAAATGCTAAAAAATTTCAGATTTCTATCAATATCAGAGCGTAGTTACATTGGTCTTCAAACCTCTAGTCGTAGGAATTCTTTTGAAAATTCTACTATAAGTGAAGAAGCAAATCCAGAAAATTATGGAGACTATGTTGATACCATCAGTCTCCACTCATTTGATTCCATTGCTTCTGCTCGTCATGAACCGTTAGTCATGCAAGAAGCAGAACGGTTGCAACTGGAGTTGCAGAATACTATTTCCATGTACAAACAGGTTTGTGAAGAATTGGCTCATGCTCAAAGTAAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAGCTAAAATAATAAATGCTTCCTTGAAAAGAGAGGAGACTTTGAGAAAGATTGCTGCTGAAGAGAAAGCAAAGTATTTAAAAGTCATGAAGGAACTCGAGGAGTCAAAAAGTGTGTTCGCCAAGGAGTCATATGAAAGGCAAATGGCCGAACTTAATGTCCTTAGAGAATCCATTGAAAAACAGAGAATTGTCGACACATTGCTCTCGAATGACAGGAGATACAGAAAATATACCATGGATGAAATCAGGATCGCAACAAACAATTTATCTGAGGACTTGGTAATTGGTGAAGGAGGATATGGGAAAGTTTATAAGTGTAATCTTGATCACACCCCAGTAGCTATAAAGGTTCTGCATCAGGAAACAATCAACAAGAAAGCGGAGTTTCTCAAAGAGGTTGAGATTCTTAGTCAACTACACCATCCAAATATGGTTTTGTTACTTGGAGCCTGTCCTGAAAATGGTTGCCTTGTTTATGAATACCTGGAAAATGGAAGCCTAGAAGACTATCTTCTCAACAGAAGTGGAAAACCACCACTTCCTTGGTTTTTTCGATTTCGTATAGTTTTTGAAATGGCTTGTGGTCTCTCATTCTTGCATAATTCAAAGCCAGAGCCTATTGTTCATCGAGATATAAAACCCGGCAACATCTTATTAGACAGAAATTATGTTAGCAAAATTTCAGATGTTGGATTAGCTAAACTCATTTCCGACGCTGTACCTGACAATATCACAGAGTACAGAGAATCGGTGCTTGCTGGTACACTTCATTACATGGACCCAGAGTATCAAAGAACTGGCACTGTTCGACCAAAATCAGATATATATGCTTTTGGAGTAATAATTCTTCAGTTGATAACTGCTCGCCATGCACGCGGACTTATTATGACTATTGAAAATGCAATTACAAATGGATCCTTTCGTGATATTTTAGATAAATCAGCTGGAGATTGGCCACTGAATGAGACAATTGAATTGGCTGAGATTGGTCTTAAATGCACTGCCCTTAGATGCAGAGATAGACCAGAACTTGATACTGAAGTTCTTCCACTGCTCAAAAGACTTTCTGATATGGCAAATGCTAGTGTCAAGATAGGAAGAAATAGTATATCCACCCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGAGCCATATATCGCCGCTGATGGTTTCACTTATGAGTACAGAGCAATCAAAGCATGGCTCAGCAAACACAATGTGTCACCAGTAACTAAGCATAAACTCCAGCATTCGGAGTTGATTCCAAACCATACTTTACGTTCTGCCATTCAGGAGTGGAAGTCAGAAATGACCTTACTTGATTAA 2295 0.3991 MSTPRSVAVAVSGGSGAAKGSRRALQWAMENVVPQADRLILVHVIPRITSIPSPGGGYIPISEEDAHAFAAYVQDVKQKSEEIFVSFKKLCEPNTIETFLLEDDNPANALLSFISESGVQILVLGSDDSNFITRKLKGPGIPTTILRCAPDSCDVYVVDRDKIVSKLADSSSSHSHEEGPRYIMSNHVNKSDNGAGVGGQMSGISASSAELKMLKNFRFLSISERSYIGLQTSSRRNSFENSTISEEANPENYGDYVDTISLHSFDSIASARHEPLVMQEAERLQLELQNTISMYKQVCEELAHAQSKALLLSSESLEEAKIINASLKREETLRKIAAEEKAKYLKVMKELEESKSVFAKESYERQMAELNVLRESIEKQRIVDTLLSNDRRYRKYTMDEIRIATNNLSEDLVIGEGGYGKVYKCNLDHTPVAIKVLHQETINKKAEFLKEVEILSQLHHPNMVLLLGACPENGCLVYEYLENGSLEDYLLNRSGKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLISDAVPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDIYAFGVIILQLITARHARGLIMTIENAITNGSFRDILDKSAGDWPLNETIELAEIGLKCTALRCRDRPELDTEVLPLLKRLSDMANASVKIGRNSISTPSQYYCPILQEIMDEPYIAADGFTYEYRAIKAWLSKHNVSPVTKHKLQHSELIPNHTLRSAIQEWKSEMTLLD 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05004 764 Pfam Protein tyrosine and serine/threonine kinase 413 664 IPR001245 GO:0004672|GO:0006468
Trre16g05004 764 PANTHER OS02G0152300 PROTEIN 7 755 - -
Trre16g05004 764 Pfam U-box domain 692 759 IPR003613 GO:0004842|GO:0016567
Trre16g05004 764 CDD RING-Ubox_WDSUB1-like 692 746 - -
Trre16g05004 764 Pfam Universal stress protein family 20 138 IPR006016 -
Trre16g05004 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 691 762 IPR013083 -
Trre16g05004 764 CDD STK_N 6 158 - -
Trre16g05004 764 Gene3D HUPs 4 166 IPR014729 -
Trre16g05004 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Trre16g05004 764 SUPERFAMILY RING/U-box 688 759 - -
Trre16g05004 764 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 5 161 - -
Trre16g05004 764 SMART serkin_6 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05004 764 MobiDBLite consensus disorder prediction 168 183 - -
Trre16g05004 764 ProSiteProfiles Protein kinase domain profile. 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05004 764 Gene3D Phosphorylase Kinase; domain 1 387 480 - -
Trre16g05004 764 Coils Coil 360 380 - -
Trre16g05004 764 Coils Coil 334 354 - -
Trre16g05004 764 SMART Ubox_2 694 756 IPR003613 GO:0004842|GO:0016567
Trre16g05004 764 Gene3D Transferase(Phosphotransferase) domain 1 481 690 - -
Trre16g05004 764 ProSitePatterns Protein kinases ATP-binding region signature. 414 435 IPR017441 GO:0005524
Trre16g05004 764 MobiDBLite consensus disorder prediction 168 196 - -
Trre16g05004 764 SUPERFAMILY Protein kinase-like (PK-like) 391 663 IPR011009 -
Trre16g05004 764 ProSiteProfiles U-box domain profile. 690 763 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05004 Trre-Chr16 53805904 53811054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05004 6 762 Plant U-box Gene Family AT5G57035 53.325 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre16g05004 PK_Tyr_Ser-Thr 4.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05004 - - gmx:100805896 1219.91