Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04995 ATGGAGGAAATATCTTCAAGTGTTGCAGTACCATTTACACTTGGAAATTTGATTCAAAAGGATGCCGCGGTTACGACTCATATGGAGATAACCGGGTTAAAGCTTATGGCAAATTCTGCTGCAGCTTTGATATTAAATCCGGCTGTTGGAAATGAAAATCATGCTGATGTTAGTCTTCAACATCAAATCACGGTATCTGCGGAGGTAAAGGAGAATCAAGTTGGATCTTCAGTTGTCTCGGAAATGGTGATTGAATGCGAGAGTAATTGGATCTTGAGTGAAAGTTGCAATCAGACCATAAAGGAAGATGAGATCATGTTAGCGGTGGATTTTCAGTGTCTGCATAATTCAGGCTCCCAATCGGTGGCAGATTCACCAATAATCGTCACGGTTGGTGATGATATTCATGGTAAGTTTAGTATAAACGAGGTACTTCCGGCACTGAAGCCAGAGCAGAATATTGCTTCTATTGCAATGGATATTGAGAGTGAAAATCGATGTGTGTCAGAAGAGGCTGATCCAAAACTTTCTGCTATGATTCTTGATCAGTTGGAAAAGGAGAACAAAACACAGAGAACAAGCTACCAGAATGGTTTGGAAGTGAGTAATGATCCTCTTTGGGGTTTCTCATCAATCTGTGGAAATAGACCGGAGATGGAAGATGCTATTGCTGTTAAACCTCAACTTTTTCAAGTCCCTACACAGATGCTAATGGATGACCATGTGAATGAAAACACAAAAGACTCACTAGCCCATTTTTTTGGTGTCTATGATGGACATGGGGGATTTCAGGTTGCTAATTACTGCCAAGAACGTCTTCATTCAGTGTTGATTGAGGAGATTGAGACGCAACGGTCAAGTTTGGTCGAAACAAACGGGAGAAACGATTGGAAGGACAATTGGAAGAAAGCATTGTCCAATTGTTTTCAGAAAGTAGATGATGAGATTGAAGTTGTTGCTCCTGAGACTGCTGGCTCCACTGCAGTGGTTGCCCTTTTAAGTCAAACCCAAATAATAGTTGCAAATTGTGGAGATTCAAGAGCTGTCTTGTATCGCGGGAAAGAAGCCATTGCATTGTCTTCTGACCACAAACCAAATCGAGAGGATGAGAGAGCTAGAATAGAAGCTGCAGGAGGAAGAGTCATACATTGGAAAGGATACAGAGTTCTTGGTGTCTTGGCCATGTCAAGGTCCATAGGTGATAGATACTTGAAACCATGGATAATTCCAGAACCAGAAGTTAATATTGTGCAAAGAGAGAAAAACGACGAGTGCCTTATTTTAGCAAGTGATGGTTTATGGGATGTAATTACAAATGAAGAAGCCTGTGAAGTTGCAAGAAAGCGAATCCTTCTTTGGCATAAGAAGTATGGTGACAATGGAACAACGGTACATGACAAAGGAGAAGGAGGAGTTGATCTTGCATCTCAGTCTGCCGCTGAGTATCTATCTAAACTCGCCCTCCACAGAGGAAGTGGCGATAACATATCTGTAATTGTGATAGACTTAAAGGCTGTGAGAAAATTGAAGAGAAAGACATAA 1542 0.4125 MEEISSSVAVPFTLGNLIQKDAAVTTHMEITGLKLMANSAAALILNPAVGNENHADVSLQHQITVSAEVKENQVGSSVVSEMVIECESNWILSESCNQTIKEDEIMLAVDFQCLHNSGSQSVADSPIIVTVGDDIHGKFSINEVLPALKPEQNIASIAMDIESENRCVSEEADPKLSAMILDQLEKENKTQRTSYQNGLEVSNDPLWGFSSICGNRPEMEDAIAVKPQLFQVPTQMLMDDHVNENTKDSLAHFFGVYDGHGGFQVANYCQERLHSVLIEEIETQRSSLVETNGRNDWKDNWKKALSNCFQKVDDEIEVVAPETAGSTAVVALLSQTQIIVANCGDSRAVLYRGKEAIALSSDHKPNREDERARIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWIIPEPEVNIVQREKNDECLILASDGLWDVITNEEACEVARKRILLWHKKYGDNGTTVHDKGEGGVDLASQSAAEYLSKLALHRGSGDNISVIVIDLKAVRKLKRKT 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04995 513 SMART PP2C_SIG_2 237 503 IPR001932 -
Trre16g04995 513 CDD PP2Cc 208 503 IPR001932 -
Trre16g04995 513 ProSitePatterns PPM-type phosphatase domain signature. 253 261 IPR000222 GO:0043169
Trre16g04995 513 SUPERFAMILY PP2C-like 202 504 IPR036457 -
Trre16g04995 513 Pfam Protein phosphatase 2C 216 496 IPR001932 -
Trre16g04995 513 PANTHER PROTEIN PHOSPHATASE 183 503 IPR015655 GO:0004722|GO:0006470
Trre16g04995 513 ProSiteProfiles PPM-type phosphatase domain profile. 206 503 IPR001932 -
Trre16g04995 513 SMART PP2C_4 196 501 IPR001932 -
Trre16g04995 513 Gene3D - 195 513 IPR036457 -
Trre16g04995 513 FunFam Protein phosphatase 2C 51 200 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04995 Trre-Chr16 53762867 53764928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04995 192 512 PP2C-type Phosphatase Gene Family AT4G26080 61.111 5.73e-137 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04995 K14497 - gmx:100789207 721.85