Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04994 ATGAAGAAAGGAAATTTGGGTCTTGGTCTCAAACTCTCTCTTCCTCAAACTGATCAAGTTGCTTTTGCAAAGTTTCTGACTGAAAGTGGAACTTTTAAGGATGGAGATCTGCTTGTTAACAGAGATGGAGTTCGAATTGTTTCTCAGACTGAAGTTGAAGCTCCACCTCCAAATCCAATCAAGCCAACAGACAACCAGTTAAGTTTGGCAGACATAGACATAGTGAAAGTTGTTGGGAAGGGAAATGGAGGAATGGTGCAATTGGTGCAGCACAAATGGACTAATCAGTTTTTTGCATTAAAGATAATTCAAATGAATATCGAAGAGTCTGTGCGCAAGCAGATAGCTAAAGAGCTGAAAATTAATCAAGCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAATCATTCTATGATAATGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGTTCCATGGCTGATCTTCTGAACAAAGTTAAAACAATTCCAGAGCCTTATCTTTCTGCCATCTGTAAGCAGGTTCTGAAGGGTTTAATGTATCTTCACCATGAAAGACATATTATCCACAGAGACTTGAAACCTTCTAATCTGTTGATTAATCACATTGGCGAAGTTAAGATTACTGATTTTGGTGTTAGTGCAATTATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACATACAACTATATGTCTCCAGAGAGAATCAATGGAAGTCAACGTGGTTACAACTACAAAAGTGATATATGGAGTTTGGGATTAATATTGCTCGAGTGTGCTTTGGGGCGGTTTCCCTATACACCGCCAGATCAAAGTGAAAGATGGGAAAGTATATTTGAGCTTATTGAAACTATTGTCGACAAGCCTCCTCCTACTCCTCCAGCTGAACAATTTTCTGCAGAATTTTGCTCATTTATCTCTGCATGTCTACAGAAAGACCCGGCAAACAGACTGTCAGCTCAGGAACTTATGGAACTTCCTTTCATCAGTATGTATGATGACCAGCATGTGGATCTTTCAGCTTTCTTCTCCAATGCAGGATCTCCACTCGCAACCTTATAA 1077 0.3937 MKKGNLGLGLKLSLPQTDQVAFAKFLTESGTFKDGDLLVNRDGVRIVSQTEVEAPPPNPIKPTDNQLSLADIDIVKVVGKGNGGMVQLVQHKWTNQFFALKIIQMNIEESVRKQIAKELKINQAAQCPYVVVCYQSFYDNGVISIILEYMDGGSMADLLNKVKTIPEPYLSAICKQVLKGLMYLHHERHIIHRDLKPSNLLINHIGEVKITDFGVSAIMENTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYTPPDQSERWESIFELIETIVDKPPPTPPAEQFSAEFCSFISACLQKDPANRLSAQELMELPFISMYDDQHVDLSAFFSNAGSPLATL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04994 358 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Trre16g04994 358 Pfam Protein kinase domain 75 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04994 358 SMART serkin_6 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04994 358 FunFam Mitogen-activated protein kinase kinase 6 40 151 - -
Trre16g04994 358 ProSiteProfiles Protein kinase domain profile. 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04994 358 FunFam Mitogen-activated protein kinase kinase 6 153 353 - -
Trre16g04994 358 CDD PKc_MAPKK_plant_like 70 338 - -
Trre16g04994 358 Gene3D Phosphorylase Kinase; domain 1 50 151 - -
Trre16g04994 358 SUPERFAMILY Protein kinase-like (PK-like) 66 342 IPR011009 -
Trre16g04994 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Trre16g04994 358 Gene3D Transferase(Phosphotransferase) domain 1 152 354 - -
Trre16g04994 358 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 18 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04994 Trre-Chr16 53757196 53760708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04994 1 329 MAP Kinase Kinase Gene Family AT4G29810 66.864 6.50e-169 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre16g04994 Pkinase 5.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04994 K20603 - gmx:100789734 633.254