Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04990 ATGGTTTGGTTTCAATGCGAAGATTGCGGAGACAACCTCAAAAAACCCAAGTTGCTCAATCACTTCCGATCATGCTCCGCCACCAAGCTTTCGTGCATTGACTGTGGCCAAATGTTCGGTCAAGACGCAGTTCAGAACCATACACAGTGTATTACAGAAGCGGAAAAGTATGGTCCAAAAGGCCAAGGCAAATCTTTGAATGCTGCAGCTGCCAAGCCTGTCAAAGATGGCAAACAAAGGCCAGTAGTTGATACTAATGTGGGTTTATCTCAACGTCCACCATGGTTCTGCAGTCTTTGCAATACAAAAGCTACAAGTAAACAAGCGCTTCTTCTCCATGCTGAAGGAAAGAAACACGGGGCAAAAGCCCGAGCCTTCCATGCTTCGCAGCAGCCACCAGTCCAGACGGATAAACCTGCCCCTGATGCAAAGGATGCCGTGGAGACTGCTTCTAATGGTACGGCAAAAGATGACAAAAATGTAGAGCAGCCAAAATTGCAAGAGTCTTCTGAACAAAATAACTTGAAACCAGGGAGTGAAGTTTCTTCAGAAAACAAAAAGAGGAAACTTGAAACATTAGAGGGTGGTCTTATTAAAAAATGCAAGAATGGCACGTTAGCTGACACGGAAAATGGTGAAGTAATTCAGGGCGAGAAAGCAGGAGAGAAGAAAATAAAATGGAAGAAGTTTATCAAAGCAGCCTTGAAAACTCATTTTGATGGATTGAAGATGAAGAAACTGAGAAAAATTGTCCACAAAGCACTGCAAGAATCTGGTATTGTAGTAAAGGAAAATGAATTGAGCGAAGCGCTTGAGAAGAAGATAAATTCCAGCTCCAAATTTGCAGTTGAGAACAAGTACGTGCGATTAGTGGCCAAAGATTGA 885 0.4294 MVWFQCEDCGDNLKKPKLLNHFRSCSATKLSCIDCGQMFGQDAVQNHTQCITEAEKYGPKGQGKSLNAAAAKPVKDGKQRPVVDTNVGLSQRPPWFCSLCNTKATSKQALLLHAEGKKHGAKARAFHASQQPPVQTDKPAPDAKDAVETASNGTAKDDKNVEQPKLQESSEQNNLKPGSEVSSENKKRKLETLEGGLIKKCKNGTLADTENGEVIQGEKAGEKKIKWKKFIKAALKTHFDGLKMKKLRKIVHKALQESGIVVKENELSEALEKKINSSSKFAVENKYVRLVAKD 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04990 294 MobiDBLite consensus disorder prediction 166 180 - -
Trre16g04990 294 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Trre16g04990 294 SMART ZnF_U1_5 92 126 IPR003604 GO:0003676|GO:0008270
Trre16g04990 294 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 291 IPR039999 GO:0003677
Trre16g04990 294 FunFam UBP1-associated proteins 1C 89 132 - -
Trre16g04990 294 Gene3D - 1 50 - -
Trre16g04990 294 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Trre16g04990 294 FunFam cell growth-regulating nucleolar protein-like 1 50 - -
Trre16g04990 294 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Trre16g04990 294 Gene3D Classic Zinc Finger 89 130 - -
Trre16g04990 294 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Trre16g04990 294 SUPERFAMILY beta-beta-alpha zinc fingers 90 126 IPR036236 -
Trre16g04990 294 MobiDBLite consensus disorder prediction 121 188 - -
Trre16g04990 294 Pfam Zinc-finger of C2H2 type 95 119 - -
Trre16g04990 294 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04990 Trre-Chr16 53730911 53733257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04990 78 224 C2H2 Transcription Factor Family AT2G19380 41.558 2.66e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04990 K15263 - gmx:100790703 428.713