Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04987 ATGTCTGCACCAGTGAACATTATTGTTGGTTCTCATGTCTGGGTTGAAGATCCAGCACTAGCATGGATTGGTGGAGAAGTTACTAAAATCAATGGTGAAGAAGTCCATGTTCGCACCGGAGATGGGAAAACAGTTGTCAAAAGTATCGCAAAGGTTTTTCCCAAGGATAATGAAGCCCCTCCTGGAGGTGTAGATGACATGACAAAATTGTCATACTTGCATGAGCCTGGAGTTCTGAACAACTTGGCAACTCGATATGAACTTAATGAAATCTATACATATACTGGAAATATCCTGATTGCGATAAACCCATTTCAAAGGTTACCACATTTATATGATACTCACATGATGCAACAATACAAAGGAGCTGCATTTGGAGAATTGAGTCCCCATGTTTTTGCAGTTGCAGATGTTGCATACAGGGCAATGATCAATGAGGGAAAAAGCAACTCAATCCTGGTTAGTGGTGAGAGTGGGGCTGGTAAGACAGAGACAACAAAAATGCTTATGCGATATCTTGCATATCTTGGGGGCCGATCCGGAGTAGAAGGGCGGACAGTTGAACAACAAGTTTTAGAATCCAATCCAGTTCTTGAAGCATTTGGAAATGCCAAAACAGTGAGAAACAATAATTCAAGTCGTTTTGGTAAATTTGTTGAGATACAATTTGACAACAAGGGAAGAATTTCTGGGGCAGCTATACGAACTTATCTACTTGAGAGGTCCCGTGTTTGTCAAGTTTCAGACCCTGAAAGAAATTACCACTGTTTTTACCTTCTCTGTGCAGCACCAGCCGAGGAAAGAGAAAAGTTTAAGCTGGGAAATCCTAGCTCCTTCCACTACCTAAACCAATCCAACTGCTATGTGCTGGATGGAGTGGATGATGCTGAAGAATATCTTGCAACTCGAAGGGCAATGGATATTGTTGGAATCAGTGAGGAGGAGCAGGAAGCTATTTTTAGGGTCGTAGCAGCAGTTTTGCACCTTGGAAATATTGAATTTGCAAAAGGAGAGGAGATTGATTCTTCTGTCCTTAAGGACGAGAAGTCTAGGTTCCATCTTAATACAACTGCTGAGCTTCTCAAGTGTGATGCTAAGAGCTTGGAAGATGCACTGATCCAGCGTGTGATGGTAACACCTGAGGAGGTTATTACAAGAACACTTGATCCTGTTGCAGCTCTCGGTAGCAGGGATGCATTAGCTAAAACTGTTTATTCTCGTTTGTTTGATTGGCTAGTGGAGAAGATCAACAATTCAATTGGGCAAGATCCAAATTCAAAATCCATCATTGGAGTTCTCGATATCTATGGGTTTGAAAGTTTTAAGTTTAACAGTTTTGAGCAGTTCTGTATTAATTTTACAAATGAGAAGCTGCAGCAACATTTTAATCAGCATGTCTTTAAAATGGAACAAGAAGAATATACCAAAGAAGAAATCGATTGGAGTTACATAGAGTTTGTTGACAACCAAGATGTTTTGGATCTAATTGAGAAGAAACCTGGAGGAATAATTTCACTTCTTGATGAAGCCTGTATGTTTCCTAAGTCTACACATGAAACATTTGCTCAGAAGTTGTACCAGACATTCAAAAACAACAAGCGCTTTATCAAACCGAAACTTTCTCGAACTAATTTCACAATATCTCATTACGCCGGGGAGGTGACATATCAAGCTGATATGTTTCTTGACAAAAACAAGGATTATGTGGTGGCAGAACATCAGGATCTGTTGATAGCCTCAAAATGCTCCTTTGTGGCAGGTCTATTCCCCCCCTCTCCAGAAGAGTCTTCAAAATCATCAAAATTCTCTTCAATAGGATCTCGCTTTAAGTTACAACTTCAGTCCTTGATGGAGACCCTAAGTTCAACAGAACCTCACTATATTAGATGCGTGAAGCCAAATAATGTTCTCAAGCCTGCTATTTTTGAAAATGTCAATATTATTCAACAATTGCGCTGTGGTGGTGTTCTAGAGGCAATTAGAATCAGCTGTGCTGGATATCCTACAAGACGGACCTTTTACGAATTTCTCAACCGATTTGGTGTTCTTGCTCCTGAAGTTCTGGATGGAAACTATGACGACAAGGTTGTATGCCAAAAGATCCTGGGTAAAATGGGCATGAAAGGTTATCAGATAGGCAAGACAAAGGTTTTCCTAAGAGCAGGCCAAATGGCTGAGTTGGATGCAAGAAGATCCGAGGTCCTTGGAAATGCAGCTAGAATCATCCAGAGGCAAACACGTACCCATATTGCACGAAAGGAATTCATTGAATTGCGTCGAGCTGCAATTAGTTTGCAATCTAATTTGCGAGGAATATTGGCCCGGAAGCTTTATGAGCAGTTGCGACGTGAAGCAGCAGCTTTGAAAATAGAAAAGAACTTCAAAGGATACATTGACAGAAAATCTTACTCAAAAGCACGATCATCTGCAATCATATTGCAGACAGGTTTAAGGTCTATGAAGGCTCGTGATGAATTTAGATTTAGAAAGCAAACAAAGGCTGCAATTAAAATTCAGGCTCATTTTCGTCGGAAAATTGCATATTCATATTATAAAAGATTGCAAAAGGCTGCGGTTGTTACTCAGTGTGGTTGGAGGAGCAGGGTTGCTAGAAAAGAACTTAGAATGCTTAAAATGGCTGCAAGAGATACAGGGGCTCTTAAAGAAGCAAAAGACAAACTAGAAAAGCGTGTTGAAGAACTTACATGGCGTTTGCAAATTGAGAAGCGTTTGAGAACTGATTTGGAAGAGGAAAAGGCACAAGAGGCTGCCAAGTTACATGATGCTTTACATGCAATGCAAATACAAGTTGCAGAAGCAAATGTCAGGGTCATCAAAGAGCGCGAGGCAGCACAGAAAGCCATTGAAGAAGCACCTCCGGTTATTAAAGAGACTCCTGTTATTATTGAAGATACTGAAAAGATTAATTCTTTATTGGCTGAAGTCAATAGTTTGAAGGAATCACTGTTATTAGAAAGAAAGGCTAAAGACGAGGCCAAAAAAGCTCAGGCTGAGGCTGAAGCTAGAAATAAGGAGCTGGTTAAAAAAGTTGAGGATTCTGACCGCAAAGCGGATCAACTCCAAGAATTGGTTCAGAGATTGGAGGAAAAAATTTCAAACGCAGAGTCAGAAAATCAAGTTCTTCGCCAGCAAGCATTGGTTGCATCACCAACTGGAAAAGCTCTTACTGCAAGACCTAGGACAGTGATTATTCAGAGGACACCAGAAAATGGGAATACTCTAAATGGTGAAGCAAAAACTTCATCGGATATGACTCTTGCACTATCCAATGTACGTGAGCCTGAATCTGAAGGAAAACCACAGAAATCTCTCAATGATAAACAACAAGAAAACCAGGACTTGTTGATCAAGTGCATATCACAGGATTTAGGATTTTCTGGTGGCAAACCTGTTGCTGCATGCGTCATATATAAATGCCTTCTACACTGGAGGTCATTTGAAGTTGAAAGAACAACTGTCTTTGACCGTATCATTCAAACAATAGCTACAGCTGTTGAGGCCCAGGATAATACTGATGTATTAGCCTATTGGTTATCTAATACATCCACTTTATTGATGCTTCTCCAACGCACCCTTAAAGCAAGTGGAGCTGCTAACTTAACACCACAACGCCGAAGAACAGCCTCATCTTCTCTGTTTGGAAGAATGTCTCAAGGGCTAAGGGGGGCATCTCCTCAAAGTGCTGGATTGCCATTTATAAACGGTCGAGGTCTTAGTAGACTTGATGGTTTACGACAAGTAGAAGCAAAATATCCAGCACTTCTGTTCAAGCAACAGCTTACTGCCTTCCTTGAGAAATTATATGGAATGATACGAGACAACCTGAAAAAGGAGATATCCCCATTACTTGGACTGTGTATACAGGCTCCAAGGACCTCTCGTCAAGGTTTAGTAAAAGGGCGCTCACATGCTAACGCGGTTGCTCAGCAAGCTTTAATAGCTCATTGGCAAAGTATTGTGAAAAGCTTGAACAGCTATCTAAAGATAATGAAAGCAAATTATTCGCCTCCTTTCTTGGTCCGTAAAGTGTTCACTCAAATATTCTCATTCATCGATGTTCAATTATTCAACAGTCTTCTGCTGCGTCGTGAGTGTTGTTCATTCAGCAACGGGGAGTATGTGAAGACAGGTTTGGCTGAATTAGAACAGTGGTGCATCGAGGCAACAGAGGAGTACACTGGCTCAGCTTGGGAGGAACTGAAACATATCAGGCAGGCAGTTGGATTCCTGGTGATACATCAAAAACCCAAGAAGTCCCTGAATGAAATAACTAAGGAGCTTTGTCCTGGTCTCAGTATACAACAGTTATACAGGATAAGTACAATGTACTGGGATGACAAATACGGCACTCACAGCGTGTCTACAGACGTTACAACAACCATGAGAGCTATGGTTGCCGAAGACTCTTCTAATGCTGTCAGCACTTCTTTCCTATTAGATGATGACTCGAGCATTCCATTTTCTGTGGACGACATCTCCAAATCCATGCAAGAAGTAGAAGTTGCTGATGTGGATCCTCCTCCATTGATACGTGAGAACTCAGGGTTCGGGTTCTTACTAGCTCGCTCGGAGTAA 4596 0.4119 MSAPVNIIVGSHVWVEDPALAWIGGEVTKINGEEVHVRTGDGKTVVKSIAKVFPKDNEAPPGGVDDMTKLSYLHEPGVLNNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMQQYKGAAFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDNKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPAEEREKFKLGNPSSFHYLNQSNCYVLDGVDDAEEYLATRRAMDIVGISEEEQEAIFRVVAAVLHLGNIEFAKGEEIDSSVLKDEKSRFHLNTTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPVAALGSRDALAKTVYSRLFDWLVEKINNSIGQDPNSKSIIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIISLLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTNFTISHYAGEVTYQADMFLDKNKDYVVAEHQDLLIASKCSFVAGLFPPSPEESSKSSKFSSIGSRFKLQLQSLMETLSSTEPHYIRCVKPNNVLKPAIFENVNIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLDGNYDDKVVCQKILGKMGMKGYQIGKTKVFLRAGQMAELDARRSEVLGNAARIIQRQTRTHIARKEFIELRRAAISLQSNLRGILARKLYEQLRREAAALKIEKNFKGYIDRKSYSKARSSAIILQTGLRSMKARDEFRFRKQTKAAIKIQAHFRRKIAYSYYKRLQKAAVVTQCGWRSRVARKELRMLKMAARDTGALKEAKDKLEKRVEELTWRLQIEKRLRTDLEEEKAQEAAKLHDALHAMQIQVAEANVRVIKEREAAQKAIEEAPPVIKETPVIIEDTEKINSLLAEVNSLKESLLLERKAKDEAKKAQAEAEARNKELVKKVEDSDRKADQLQELVQRLEEKISNAESENQVLRQQALVASPTGKALTARPRTVIIQRTPENGNTLNGEAKTSSDMTLALSNVREPESEGKPQKSLNDKQQENQDLLIKCISQDLGFSGGKPVAACVIYKCLLHWRSFEVERTTVFDRIIQTIATAVEAQDNTDVLAYWLSNTSTLLMLLQRTLKASGAANLTPQRRRTASSSLFGRMSQGLRGASPQSAGLPFINGRGLSRLDGLRQVEAKYPALLFKQQLTAFLEKLYGMIRDNLKKEISPLLGLCIQAPRTSRQGLVKGRSHANAVAQQALIAHWQSIVKSLNSYLKIMKANYSPPFLVRKVFTQIFSFIDVQLFNSLLLRRECCSFSNGEYVKTGLAELEQWCIEATEEYTGSAWEELKHIRQAVGFLVIHQKPKKSLNEITKELCPGLSIQQLYRISTMYWDDKYGTHSVSTDVTTTMRAMVAEDSSNAVSTSFLLDDDSSIPFSVDDISKSMQEVEVADVDPPPLIRENSGFGFLLARSE 1531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04987 1531 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre16g04987 1531 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre16g04987 1531 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre16g04987 1531 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre16g04987 1531 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre16g04987 1531 PANTHER MYOSIN 58 1462 - -
Trre16g04987 1531 SMART iq_5 830 852 IPR000048 GO:0005515
Trre16g04987 1531 SMART iq_5 734 756 IPR000048 GO:0005515
Trre16g04987 1531 SMART iq_5 782 804 IPR000048 GO:0005515
Trre16g04987 1531 SMART iq_5 757 779 IPR000048 GO:0005515
Trre16g04987 1531 SMART iq_5 853 875 IPR000048 GO:0005515
Trre16g04987 1531 SMART iq_5 805 827 IPR000048 GO:0005515
Trre16g04987 1531 ProSiteProfiles IQ motif profile. 831 857 IPR000048 GO:0005515
Trre16g04987 1531 FunFam unconventional myosin-Va 833 881 - -
Trre16g04987 1531 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Trre16g04987 1531 CDD MYSc_Myo11 76 720 IPR036018 -
Trre16g04987 1531 ProSiteProfiles Dilute domain profile. 1162 1474 IPR002710 -
Trre16g04987 1531 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Trre16g04987 1531 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre16g04987 1531 CDD MyosinXI_CBD 1113 1497 IPR037975 GO:0007015
Trre16g04987 1531 Gene3D - 439 623 - -
Trre16g04987 1531 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre16g04987 1531 FunFam Myosin heavy chain 252 307 - -
Trre16g04987 1531 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Trre16g04987 1531 Gene3D - 833 882 - -
Trre16g04987 1531 Gene3D - 786 832 - -
Trre16g04987 1531 Gene3D - 735 785 - -
Trre16g04987 1531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 882 IPR027417 -
Trre16g04987 1531 ProSiteProfiles IQ motif profile. 737 764 IPR000048 GO:0005515
Trre16g04987 1531 Pfam Myosin N-terminal SH3-like domain 9 46 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre16g04987 1531 Coils Coil 985 1051 - -
Trre16g04987 1531 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Trre16g04987 1531 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515
Trre16g04987 1531 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Trre16g04987 1531 Pfam IQ calmodulin-binding motif 759 778 IPR000048 GO:0005515
Trre16g04987 1531 FunFam Myosin 2 312 427 - -
Trre16g04987 1531 Gene3D Kinesin motor domain 65 662 IPR036961 -
Trre16g04987 1531 FunFam Class V myosin 439 578 - -
Trre16g04987 1531 Pfam DIL domain 1350 1453 IPR002710 -
Trre16g04987 1531 Gene3D - 252 310 - -
Trre16g04987 1531 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Trre16g04987 1531 MobiDBLite consensus disorder prediction 1002 1022 - -
Trre16g04987 1531 Gene3D - 667 733 - -
Trre16g04987 1531 ProSiteProfiles IQ motif profile. 783 809 IPR000048 GO:0005515
Trre16g04987 1531 Coils Coil 884 925 - -
Trre16g04987 1531 SMART DIL_2 1349 1456 IPR002710 -
Trre16g04987 1531 FunFam Myosin XI D 667 730 - -
Trre16g04987 1531 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre16g04987 1531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 785 IPR027417 -
Trre16g04987 1531 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre16g04987 1531 FunFam unconventional myosin-Va 737 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04987 Trre-Chr16 53684427 53706859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04987 67 1531 Myosins gene family AT5G20490 82.389 0.0 2510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04987 K10357 - gmx:100777802 2778.43