Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04977 ATGGGTAGAAGCCCTTGTTGTGCAAAAGAAGGCTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCACTGAATACATTAAGCTCCATGGTGAAGGAAAATGGAGAAACCTTCCAAAAAGAGCAGGTTTAAAAAGATGTGGAAAAAGTTGTAGACTAAGATGGTTGAATTATCTTAGACCGGATATTAAGAGAGGTAATATATCGTCGGATGAAGAAGAACTTATCATTAGACTTCACAAACTACTCGGAAACCGATGGTCTCTAATAGCCGGAAGACTTCCAGGGCGAACAGACAATGAAATAAAGAACTACTGGAACACAAATTTAGGAAAAAAGGTTAAGGATCTTAATCAACAAAACACCAACAATTCTTCTCCAACTAAACCTTCTGGTCAACCAAAAAATTCAAAGATCAAACAGAAACAACAGATCAATCCTAAGCCAATGAAGCCAAACTCGAATGTTGTCCGTACAAAAGCTACCAAATGTTCTAAGGTATTGTTCATAAACTCACCACCAATGCATAATTTGCAGAACAAAGCTGAGGCAGAGACAAAAACAAAGCCATTAATGCTGGTTAATGGTGTAGCTAGTGATTCAATGAGTAACAACGAAATGGAACGCGGTAATGGATTTTTGTCATTTTGCGACGAAGAGAAAGAACTATCCGCAGATTTGCTAGATGATTTTAACATCGCGGATGATATTTGCTTATCTGAATTTCTAAACTCCGATTTCTCAAATGCGTGCAATTTCGATTACAATGATCTATTGTCGCCTTGTTCGGATCAAACTCAAATGTTCTCTGATGATGAGATTCTCAAGAATTGGACACAATGTAACTTTGCTGATGAGACAAATGTGTCCAACAACCTTAATTCTTTTGCTTCTTTTCTCGAATCCAGTGAGGAAGTACTAGGAGAATGA 936 0.3771 MGRSPCCAKEGLNRGAWTAHEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQQNTNNSSPTKPSGQPKNSKIKQKQQINPKPMKPNSNVVRTKATKCSKVLFINSPPMHNLQNKAEAETKTKPLMLVNGVASDSMSNNEMERGNGFLSFCDEEKELSADLLDDFNIADDICLSEFLNSDFSNACNFDYNDLLSPCSDQTQMFSDDEILKNWTQCNFADETNVSNNLNSFASFLESSEEVLGE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04977 311 Gene3D - 14 66 - -
Trre16g04977 311 Gene3D - 70 153 - -
Trre16g04977 311 SMART sant 66 114 IPR001005 -
Trre16g04977 311 SMART sant 13 63 IPR001005 -
Trre16g04977 311 CDD SANT 16 61 IPR001005 -
Trre16g04977 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre16g04977 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre16g04977 311 FunFam MYB-related transcription factor 13 66 - -
Trre16g04977 311 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Trre16g04977 311 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 185 - -
Trre16g04977 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre16g04977 311 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre16g04977 311 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre16g04977 311 FunFam Transcription factor TT2 70 144 - -
Trre16g04977 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre16g04977 311 MobiDBLite consensus disorder prediction 119 159 - -
Trre16g04977 311 CDD SANT 71 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04977 Trre-Chr16 53611679 53612857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04977 1 116 MYB Transcription Factor Family AT5G49330 74.138 1.80e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g04977 Myb_DNA-binding 5.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04977 K09422 - gmx:100802704 416.772