Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04973 ATGAATGGAAGAAACAGACATCCTTTTACTCCAACTCAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAATACATGGCTTCTGGTATCTCCATTCCACCTGATCTTCTACTCACCATCAAAAGAAGCTACTTAGACTCTTCAAGGCTCTTACCTCATCACTCTCAACACTTTGGGTGGAACTATTTGCCAATGGGATTGGGAAGAAAAATAGACCCAGAGCCAGGAAGATGTAGAAGAACAGATGGAAAGAAATGGAGGTGTTCAAAAGAAGCATATCCAGATTCAAAGTACTGTGAGAGACACATGCATAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAATTTTGAAAACATCAACAACAAACACAGATTCTGCAGCTGCTACTTCATCAATCTTATCAATGACTAAAAATAGTAGTTTTGATCCTGATAATACTGCAGCACTAAACCCAACAACTCATGACACTACTTACCATTACCCTCATCAACACTCTTCTTATGCTTCTTCCCATCTTAACCACTCTTTCCTCTACCATAACCCTCCATCTTCAAGGCCTAATTTCTCATTTCAAGAGAACACTAGCACTCCCATGTTTCTTGACAGTACTGGTTCTTCCTCTCACAATAACAACAACAACACTGATTGCAGAAACAGGTATGTTTATGGACTGAGAGAGGAGGTGGATGAGCATGCTTTCTTCACTGAACCTTCTGAAACTATGAGAAGTTTATCAGCTTCATCAATGGATGATTCATGGCAACTCAAACCACTTACTATAAGTTCCTCTTCCTCTTCAAAACAGAGGAATTGCTCTGGTTTATCCAATGACAATGAGTACTCTTATTTGCAACTTCAAAGCCTAAGTAACAACAACAATAACTCAAAACAACCACAGCAACAAGATCAAAGTTATTACATCTCAGGTAATGAAGAAACATTCATGAAACAAGAGAAAGAAGAACCTCAAAAGATTTTTCATCGTTTCTTTGATGAATGGCCACCCAAAAGCAGTAGAAATTCATGGCTTGATTTGGATGATAAATCATCCACCACTCAGCTTTCAATTTCCATTCCAACATCATCTCATGATTTCACAACTTTTAGTTCCACAAACCAACGAGATGGTTAA 1137 0.3861 MNGRNRHPFTPTQWQELEHQALIYKYMASGISIPPDLLLTIKRSYLDSSRLLPHHSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEILKTSTTNTDSAAATSSILSMTKNSSFDPDNTAALNPTTHDTTYHYPHQHSSYASSHLNHSFLYHNPPSSRPNFSFQENTSTPMFLDSTGSSSHNNNNNTDCRNRYVYGLREEVDEHAFFTEPSETMRSLSASSMDDSWQLKPLTISSSSSSKQRNCSGLSNDNEYSYLQLQSLSNNNNNSKQPQQQDQSYYISGNEETFMKQEKEEPQKIFHRFFDEWPPKSSRNSWLDLDDKSSTTQLSISIPTSSHDFTTFSSTNQRDG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04973 378 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre16g04973 378 ProSiteProfiles WRC domain profile. 73 117 IPR014977 -
Trre16g04973 378 PANTHER GROWTH-REGULATING FACTOR 5 8 366 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre16g04973 378 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre16g04973 378 Pfam WRC 74 116 IPR014977 -
Trre16g04973 378 MobiDBLite consensus disorder prediction 185 217 - -
Trre16g04973 378 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04973 Trre-Chr16 53592590 53594427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04973 5 116 GRF Transcription Factor Family AT3G13960 70.435 1.34e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre16g04973 WRC 8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04973 - - cam:101508073 556.984