Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04962 ATGAAATTTACGTGGAAATCGATATTTCCAAGTTGTTATAAGGGTGAAGAAGATTATTCTTCACCCAAACCGGCAGCAACAACAAAAGTTGTTGCTACAACAAAAGACGATGTTGCTACAAAGACAAATTCTTTTAACAGAATTTCTCTCACGGATCTGAGTTTTCCAAGTGCTACAACACTTTCAGAAGATCTTTCAATATCTCTAGTTGGTTCTAATCTATATGTTTTTACACTTGCTGAGCTTAAGATAATTACTCAGAGTTTTTCTTCTAGTAATTTTCTTGGTGAAGGTGGATTTGGACCTGTTCATAAAGGGTTCATTGATGATAAGGTTAGAGCTGGACTTGAACCTCAACCTGTGGCTGTTAAGCTTCTAGATTTGGATGGTTCTCAAGGTCATAAAGAATGGCTGACTGAAGTTGTGTTTCTTGGTCAATTGAGACATCAACACCTTGTGAAGCTGATTGGATATTGCTGTGAAGAGGCACATAGACTTTTGGTTTATGAGTATTTACCAAGAGGAAGCTTAGAACATCAACTATTTAGAAGATATTCAGCATCATTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTCTAGCCTTTTTACATGATGCAAAGAAACCAGTTATCTATAGAGATTTCAAAGCTTCAAACATCTTATTAGATTCTGATTATAATGCAAAACTCTCTGATTTTGGCTTGGCAAAAGATGGTCCGGAAGGAGATGATACACACGTTTCAACTCGGGTAATGGGAACTCAAGGTTATGCTGCCCCGGAATACATCATGACAGGACATTTGACAGCAATGAGTGATGTATATAGTTTTGGAGTTGTCCTATTGGAACTATTAACCGGTAGAAGATCGGTGGACAAAACACGTCCACCAAGAGAACATAATTTAGTCGAATGGGCCAGACCGGTTTTAAACGATGCACGTAAACTTAGCAGAATAATGGATCCAAGGCTTGAAGGACAGTTTTCTGAATCAGGAGCAAGAAAAGCAGCTGCATTAGCTTATCAATGTTTAAGTCATAGACCAAGAAATAGACCTTCAATGTCTACAGTAGTTACTACTCTTGAACCTCTTCAAAATTATGTAGATATTCCAATTGGTACTTTTGTTTATACAGCTCCAAGTGATGTTAGTAACAATGAAGTGCAAAAAGAGAGTAGTAATACTACTCCTTCTGAGACACCAAAGGAGAGATCAAGAAGAGATCATCGTAGAAATCAACATCAAAGTAATGGTACTAGTCATCATAAGAATGTTGTTATAGATAAAAATAATACTAATGAAGTGATTAAAGATGGAGAAGAATATTATGATACACCTAAGGAGAGAAAGAGAGAAAATGGTCACAATCATAGAAGTCATCATCATCATCATCGTCACAATGGACAAAGGCATCCACTAAAGTCACCAAAAACAAAATCACCAAATGAGCTAGGACATAAAAGTGGGTCACACTCATCAAATTCACCAGATACCTCTATTACATCAGCAAGCCAAGGAAATTAA 1539 0.3684 MKFTWKSIFPSCYKGEEDYSSPKPAATTKVVATTKDDVATKTNSFNRISLTDLSFPSATTLSEDLSISLVGSNLYVFTLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKVRAGLEPQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHQHLVKLIGYCCEEAHRLLVYEYLPRGSLEHQLFRRYSASLPWSTRMKIAVGAAKGLAFLHDAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKTRPPREHNLVEWARPVLNDARKLSRIMDPRLEGQFSESGARKAAALAYQCLSHRPRNRPSMSTVVTTLEPLQNYVDIPIGTFVYTAPSDVSNNEVQKESSNTTPSETPKERSRRDHRRNQHQSNGTSHHKNVVIDKNNTNEVIKDGEEYYDTPKERKRENGHNHRSHHHHHRHNGQRHPLKSPKTKSPNELGHKSGSHSSNSPDTSITSASQGN 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04962 512 PANTHER OS01G0588500 PROTEIN-RELATED 45 370 - -
Trre16g04962 512 MobiDBLite consensus disorder prediction 458 478 - -
Trre16g04962 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Trre16g04962 512 Pfam Protein tyrosine and serine/threonine kinase 93 366 IPR001245 GO:0004672|GO:0006468
Trre16g04962 512 FunFam Serine/threonine-protein kinase BIK1 56 171 - -
Trre16g04962 512 SUPERFAMILY Protein kinase-like (PK-like) 64 367 IPR011009 -
Trre16g04962 512 MobiDBLite consensus disorder prediction 487 512 - -
Trre16g04962 512 MobiDBLite consensus disorder prediction 405 420 - -
Trre16g04962 512 MobiDBLite consensus disorder prediction 388 404 - -
Trre16g04962 512 FunFam Probable serine/threonine-protein kinase PBL8 172 394 - -
Trre16g04962 512 Gene3D Phosphorylase Kinase; domain 1 49 171 - -
Trre16g04962 512 MobiDBLite consensus disorder prediction 438 457 - -
Trre16g04962 512 ProSiteProfiles Protein kinase domain profile. 89 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04962 512 CDD STKc_IRAK 95 369 - -
Trre16g04962 512 MobiDBLite consensus disorder prediction 388 512 - -
Trre16g04962 512 Gene3D Transferase(Phosphotransferase) domain 1 172 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04962 Trre-Chr16 53472869 53474987 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04962 77 366 Glycoside Hydrolase AT3G07070 55.290 6.54e-104 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre16g04962 PK_Tyr_Ser-Thr 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04962 - - mtr:25494166 819.69