Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04961 ATGACTGTGATGAAATTTACGTGGAAATCGATATTTCCAAGTTGTTATAAGGGTGAAGAAGATTATTCTTCACCCAAACCGGCAGCAACAACAAAAGTTGTTGCTACAACAAAAGACGATGTTGCTACAAAGACAAATTCTTTTAACAGAATTTCTCTCACGGATCTGAGTTTTCCAAGTGCTACAACACTTTCAGAAGATCTTTCAATATCTCTAGTTGGTTCTAATCTATATGTTTTTACACTTGCTGAGCTTAAGATAATTACTCAGAGTTTTTCTTCTAGTAATTTTCTTGGTGAAGGTGGATTTGGACCTGTTCATAAAGGGTTCATTGATGATAAGGTTAGAGCTGGACTTGAACCTCAACCTGTGGCTGTTAAGCTTCTAGATTTGGATGGTTCTCAAGGTCATAAAGAATGGCTGACTGAAGTTGTGTTTCTTGGTCAATTGAGACATCAACACCTTGTGAAGCTGATTGGATATTGCTGTGAAGAGGCACATAGACTTTTGGTTTATGAGTATTTACCAAGAGGAAGCTTAGAACATCAACTATTTAGAAGATATTCAGCATCATTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTCTAGCCTTTTTACATGATGCAAAGAAACCAGTTATCTATAGAGATTTCAAAGCTTCAAACATCTTATTAGATTCTGATTATAATGCAAAACTCTCTGATTTTGGCTTGGCAAAAGATGGTCCGGAAGGAGATGATACACACGTTTCAACTCGGGTAATGGGAACTCAAGGTTATGCTGCCCCGGAATACATCATGACAGGACATTTGACAGCAATGAGTGATGTATATAGTTTTGGAGTTGTCCTATTGGAACTATTAACCGGTAGAAGATCGGTGGACAAAACACGTCCACCAAGAGAACATAATTTAGTCGAATGGGCCAGACCGGTTTTAAACGATGCACGTAAACTTAGCAGAATAATGGATCCAAGGCTTGAAGGACAGTTTTCTGAATCAGGAGCAAGAAAAGCAGCTGCATTAGCTTATCAATGTTTAAGTCATAGACCAAGAAATAGACCTTCAATGTCTACAGTAGTTACTACTCTTGAACCTCTTCAAAATTATGTAGATATTCCAATTGGTACTTTTGTTTATACAGCTCCAAATAAAAATAATACTAATGAAGTGATTAAAGATGGAGAAGAATATTATGATACACCTAAGGAGAGAAAGAGAGAAAATGGTCACAATCATAGAAGTCATCATCATCATCATCGTCACAATGGACAAAGGCATCCACTAAAGTCACCAAAAACAAAATCACCAAATGAGCTAGGACATAAAAGTGGGTCACACTCATCAAATTCACCAGATACCTCTATTACATCAGCAAGCCAAGGAAATTAA 1407 0.371 MTVMKFTWKSIFPSCYKGEEDYSSPKPAATTKVVATTKDDVATKTNSFNRISLTDLSFPSATTLSEDLSISLVGSNLYVFTLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKVRAGLEPQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHQHLVKLIGYCCEEAHRLLVYEYLPRGSLEHQLFRRYSASLPWSTRMKIAVGAAKGLAFLHDAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKTRPPREHNLVEWARPVLNDARKLSRIMDPRLEGQFSESGARKAAALAYQCLSHRPRNRPSMSTVVTTLEPLQNYVDIPIGTFVYTAPNKNNTNEVIKDGEEYYDTPKERKRENGHNHRSHHHHHRHNGQRHPLKSPKTKSPNELGHKSGSHSSNSPDTSITSASQGN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04961 468 Pfam Protein tyrosine and serine/threonine kinase 96 369 IPR001245 GO:0004672|GO:0006468
Trre16g04961 468 MobiDBLite consensus disorder prediction 386 468 - -
Trre16g04961 468 PANTHER OS01G0588500 PROTEIN-RELATED 47 373 - -
Trre16g04961 468 MobiDBLite consensus disorder prediction 414 434 - -
Trre16g04961 468 SUPERFAMILY Protein kinase-like (PK-like) 67 371 IPR011009 -
Trre16g04961 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Trre16g04961 468 Gene3D Phosphorylase Kinase; domain 1 55 174 - -
Trre16g04961 468 ProSiteProfiles Protein kinase domain profile. 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04961 468 MobiDBLite consensus disorder prediction 395 413 - -
Trre16g04961 468 MobiDBLite consensus disorder prediction 443 468 - -
Trre16g04961 468 CDD STKc_IRAK 98 372 - -
Trre16g04961 468 FunFam Serine/threonine-protein kinase BIK1 59 174 - -
Trre16g04961 468 FunFam Probable serine/threonine-protein kinase PBL8 175 390 - -
Trre16g04961 468 Gene3D Transferase(Phosphotransferase) domain 1 175 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04961 Trre-Chr16 53472869 53474996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04961 80 399 Glycoside Hydrolase AT3G07070 52.012 4.85e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre16g04961 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04961 - - mtr:25494166 731.865