Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04959 ATGAAACACAACAACCACAATGCATCACCATCCATGTACTCTTCCATTCTCAAATCTTCTTCTGATTCACTTCTTTATACCTATACTAACTCTTACAACGGCTTCGCTGTTTCCCTTGACAATGAACAAGCGCAAAAACTGCGTAGTTCTGATTCAGTTATGGGTGTGTACGAAGATACCCTGTACTCGCTACACACAACCAGAACCCCAGAGTTTTTGGGTCTTCTTCAAATTCAGACCCATTCTCAGTATCTTCATCAACCTTCATACGACGTCGTTATTGGTGTTCTTGATACTGGCGTATGGCCAGAATCACAGAGTTTCCACGATTCTCAAATGCCACAAATTCCAACACGATGGCGTGGAAAGTGTGAATCAGCACCAGATTTCGATCCTTCACTCTGTAACAAGAAGCTTATCGGTGCTCGAAGCTTCTCCAAGGGCTATCTAATGGGTTCCGCCGGAGGTGGTAGAAGAAAAGCTACTGAGACTATTTCACCTCGTGACAGAGATGGCCATGGTACTCACACTGCTACCACCGCCGCTGGCTCCGCCGTAGCCAACGCTACTCTTCTCGGTTACGCTACTGGAACTGCACGTGGTATGGCTCCTCAGGCGCGCATCGCTGTTTACAAGGTATGCTGGACTGACGGTTGCTTTGCTTCCGACATACTCGCCGGAATAGATCAAGCAATTCAAGACGGCGTTGATGTGTTATCGCTTTCCCTCGGTGGTTCATCTTCCACTCCTTACTACTTCGACACAGTCGCAATCGGAGCTTTCGCTGCAGTGGAGAGAGGAATATTCGTTTCGTGTTCAGCGGGGAATACCGGACCTCGCAGTGGTTCCTTGTCGAATGTGGCTCCGTGGCTCATGACCGTCGGAGCGGGGACTTTGGATCGGGATTTTCCGGCTTACGCTACTCTCGGAAACGGAAAACGTTTCTCCGGCGTTTCACTTTACAGTGGAGAAGGAATGGGAAACGAACCGGTTGGTTTGGTTTATTTTAACGAACGGTTCAACTCATCAAGTAGCATATGTATGCCCGGTTCACTTGACCCAGAAATCGTGCGCGGGAAAGTGGTTGTTTGTGATAGAGGTGTGAACTCACGTGTTGAGAAAGGCACAGTGGTAAGCGACGCCGGAGGAGTTGGGATGATTCTTGCTAACACGGCGGCGAGCGGTGAGGGATTGGTGGCTGACAGTCACTTGGTACCCGCCGTAGCGGTTGGAAAAACCGAGGGAGATGAGATAAAAGAGTATGCATCGTTAGATCGTAATCCAACGGCTGTCCTTAGTTTTGGTGGAACTGTTTTGAACGTGAAACCTTCGCCCGTGATAGCATCTTTCAGCTCTCGTGGGCCCAACGGTGTGACCCCACAGATTCTAAAACCGGATATTATTGGGCCCGGCGTAAACATCTTAGCGGGCTGGACTGGTGCTGTTGGGCCTTCTGGCTCACAAGACACTCGCAAAACCCAATTCAATATCATGTCTGGTACGTCAATGTCATGTCCACACATAAGTGGAGTAGCTGCATTATTGAAAGCGGTTCATCCGGATTGGAGTCCAAGTGCAATCAAATCAGCTCTCATGACAACAGCTTATACCCTTGACAACACTGAATCTCCCCTAAGGGATGCAATGGGAGAGGCCTTATCCACACCATGGGCTTATGGGTCAGGACATGTCAACCCACAAAAGGCCTTATCTCCTGGGCTTGTCTATGATGTTGACACCAACGATTACATTGCATTTTTGTGTTCCTTAAACTACACACTTGACCATGTGAAACACATTGTCAAGCGTCCTAATGTTAATTGTTCTACTTCTTTGTCTGACCCTGGTGATCTTAATTATCCATCATTTTCTGTTGTTTTTGGTAACAATAGTAGTGTTGTTCAATACACGCGGACACTCAGTAACGTTGGGGAGTCCGGATCGGTTTATGAAGTGGCTGTGAGTGGACCATCGACGGTAGGGATAACGGTGAGCCCTACCAAGCTTGTATTTGAACAAGTTGGAGAAAGGCAAACATACATGGTCAAGTTTGTTTCCAACAGAGATTCTGTTGATGATTCAATTACGTCTGATTTTGGCAGTATTACGTGGAGCAATGAACGACACCAAGTTAGGAGCCCAATTGCTTTTACATGGACCAATTTGTGA 2169 0.4749 MKHNNHNASPSMYSSILKSSSDSLLYTYTNSYNGFAVSLDNEQAQKLRSSDSVMGVYEDTLYSLHTTRTPEFLGLLQIQTHSQYLHQPSYDVVIGVLDTGVWPESQSFHDSQMPQIPTRWRGKCESAPDFDPSLCNKKLIGARSFSKGYLMGSAGGGRRKATETISPRDRDGHGTHTATTAAGSAVANATLLGYATGTARGMAPQARIAVYKVCWTDGCFASDILAGIDQAIQDGVDVLSLSLGGSSSTPYYFDTVAIGAFAAVERGIFVSCSAGNTGPRSGSLSNVAPWLMTVGAGTLDRDFPAYATLGNGKRFSGVSLYSGEGMGNEPVGLVYFNERFNSSSSICMPGSLDPEIVRGKVVVCDRGVNSRVEKGTVVSDAGGVGMILANTAASGEGLVADSHLVPAVAVGKTEGDEIKEYASLDRNPTAVLSFGGTVLNVKPSPVIASFSSRGPNGVTPQILKPDIIGPGVNILAGWTGAVGPSGSQDTRKTQFNIMSGTSMSCPHISGVAALLKAVHPDWSPSAIKSALMTTAYTLDNTESPLRDAMGEALSTPWAYGSGHVNPQKALSPGLVYDVDTNDYIAFLCSLNYTLDHVKHIVKRPNVNCSTSLSDPGDLNYPSFSVVFGNNSSVVQYTRTLSNVGESGSVYEVAVSGPSTVGITVSPTKLVFEQVGERQTYMVKFVSNRDSVDDSITSDFGSITWSNERHQVRSPIAFTWTNL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04959 722 ProSitePatterns Serine proteases, subtilase family, serine active site. 500 510 IPR023828 -
Trre16g04959 722 Pfam PA domain 355 418 IPR003137 -
Trre16g04959 722 PRINTS Subtilisin serine protease family (S8) signature 499 515 IPR015500 -
Trre16g04959 722 PRINTS Subtilisin serine protease family (S8) signature 169 182 IPR015500 -
Trre16g04959 722 PRINTS Subtilisin serine protease family (S8) signature 89 108 IPR015500 -
Trre16g04959 722 FunFam subtilisin-like protease SBT1.5 300 439 - -
Trre16g04959 722 Pfam Fibronectin type-III domain 617 716 IPR041469 -
Trre16g04959 722 Gene3D - 300 439 - -
Trre16g04959 722 CDD PA_subtilisin_like 306 430 - -
Trre16g04959 722 FunFam Subtilisin-like protease SBT1.5 587 720 - -
Trre16g04959 722 SUPERFAMILY Subtilisin-like 64 574 IPR036852 GO:0004252|GO:0006508
Trre16g04959 722 Gene3D Peptidase S8/S53 domain 91 583 IPR036852 GO:0004252|GO:0006508
Trre16g04959 722 Gene3D - 587 719 - -
Trre16g04959 722 ProSiteProfiles Serine proteases, subtilase domain profile. 70 570 - -
Trre16g04959 722 MobiDBLite consensus disorder prediction 153 177 - -
Trre16g04959 722 Pfam Peptidase inhibitor I9 11 65 IPR010259 -
Trre16g04959 722 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 20 716 IPR045051 -
Trre16g04959 722 Pfam Subtilase family 91 542 IPR000209 GO:0006508|GO:0008236
Trre16g04959 722 CDD Peptidases_S8_3 62 536 IPR034197 -
Trre16g04959 722 FunFam Subtilisin-like protease SBT1.5 91 311 - -
Trre16g04959 722 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 65 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04959 Trre-Chr16 53443189 53445502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04959 5 722 Subtilisin-like Serine Gene Family AT2G05920 66.346 0.0 969
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04959 - - gmx:100786523 1117.06