Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04949 ATGGCCGTTGTTCGCTTCCTTCTTCTCATCTTCCCTCTTCTCATCTCTCATTCTCTCTCAATTCCTGAAACTGAAGCACTTCTCAAGCTAAAACAATCTTTCACAAACACACAACCACTTTCTTCATGGGTACCTAATCAACATCCATGTTCTTCAAAATGGGCTGGTGTCATATGTTTCAATAACATCATTGAAAGTCTTCATCTTGGTGGTTTAGGCCTCTCTGGAACAATTGATATTGATTCTCTTTTACAGATTCCAACTTTAAGAACCATTAGTTTTGTTAACAACTCTTTCTCTGGTCCTATTCCTGAATTCAACAAACTTGGTGCTTTGAAAGCTCTTTATTTATCTGAAAACCAATTCTCAGGACCTATCCCTCCACAGTTTTTCTCCCATTTAGCTTCTTTGAAGAAAGCATGGCTCAATAACAACAAATTCTCAGGAAATATACCGGAATCTTTAACAGGTCTTCGCTTCCTTGGCGAGTTACATCTCGAAAACAATGAATTCTCTGGTCCTATTCCAGAATTTAAACAAGAAATCAAATCATTTGACATGTCTAATAACAAATTACAAGGTCCAATACCTGTTTCAATGACGAGGTTTGAAGCAAAAGTTTTTGCAGGAAATGAAGAGCTTTGTGGGAAGCCTCTTGACAAAGAATGTGACTCTTCTTTGCCTTCCTATTCAACATCTCCTGAAAGTGGACAAGGTTCGGGTTGGGCAGTAAAATTTATTGGAATTCTCATTGTTGCTACCGTGGTAGCTGTTCTATTTACGTTGATAAAATCAAGACGTAATATTGACGATGATTTTAGTGTTATGAGTAGAGAAAATAATGACGATGTTGTTCAAGTTCATGTTCCTAGCTCTAACCATAGCAGAGCATCAGAAGGTGGTGGTAGCAAAAAGGAATCTAGGAGAGGTTCATCAAAGAGTGGTGGAATGGGTGATCTTATTATGGTGAATGATGAAAAAGGTGTATTTGGTTTACCTGATTTGATGAAAGCTGCTGCTGAGGTTTTGGGAAATGGTGGGTTAGGTTCTGCTTATAAAGCTGCTATGACTAATGGTTTATCTGTGGTTGTCAAGAGGATGAGGGAGATGAATAAAGTTAGCAGAGATATATTTGATGCTGAGATGAGACGCTTTGGGAGGCTTAGAAACCGTAACATATTAACTCCTTTGGCTTATCATTACCGCAGGGAAGAGAAGTTGTTTGTTACTGAATATATGCCCAAAGGAAGCTTGTTATATGTCTTGCATGGTGATAGAGGAACAAGTCATGCTGAACTGAATTGGCCAACACGTTTGAAGATTGTGAAAGGAATTGCACGTGGATTAACATTTCTTTACACTGAATTTGCATCTGATGATCTGCCACATGGAAACCTTAAATCAAGCAACGTACTTTTAACTGATAATTATGAGCCACTCCTAAGTGACTTTGCATTTCATCCACTAATCAATACAAACTATGCAACACAAACAATGTTTGCATACAAAACTCCTGATTACGTTGTCTACCAACAAGTTTCACAGAAAACAGATGTTTATTGTCTCGGAATCATCATTCTTGAAATCATTACAGGGAAATTCCCTTCTCAATATCATAGTAATGGTAAAGGTGGTACTGATGTTGTTCAATGGGTTTTCACAGCAATATCTGAAAGAAGAGAAGCTGAATTGATTGATCCTGAGTTAACAGGAAATAATACAGATTCAACGAATCAAATGTTACAACTTATTCAAATTGGGGCTGCTTGTACAGAAAGTAACCCTGAACAACGACTTAACATGAAGGAAGCAATTAGGAGGATAGACGAATTACAAGTTTAA 1842 0.3751 MAVVRFLLLIFPLLISHSLSIPETEALLKLKQSFTNTQPLSSWVPNQHPCSSKWAGVICFNNIIESLHLGGLGLSGTIDIDSLLQIPTLRTISFVNNSFSGPIPEFNKLGALKALYLSENQFSGPIPPQFFSHLASLKKAWLNNNKFSGNIPESLTGLRFLGELHLENNEFSGPIPEFKQEIKSFDMSNNKLQGPIPVSMTRFEAKVFAGNEELCGKPLDKECDSSLPSYSTSPESGQGSGWAVKFIGILIVATVVAVLFTLIKSRRNIDDDFSVMSRENNDDVVQVHVPSSNHSRASEGGGSKKESRRGSSKSGGMGDLIMVNDEKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMTNGLSVVVKRMREMNKVSRDIFDAEMRRFGRLRNRNILTPLAYHYRREEKLFVTEYMPKGSLLYVLHGDRGTSHAELNWPTRLKIVKGIARGLTFLYTEFASDDLPHGNLKSSNVLLTDNYEPLLSDFAFHPLINTNYATQTMFAYKTPDYVVYQQVSQKTDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVFTAISERREAELIDPELTGNNTDSTNQMLQLIQIGAACTESNPEQRLNMKEAIRRIDELQV 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04949 613 MobiDBLite consensus disorder prediction 287 319 - -
Trre16g04949 613 Pfam Leucine rich repeat N-terminal domain 23 59 IPR013210 -
Trre16g04949 613 Gene3D Transferase(Phosphotransferase) domain 1 414 613 - -
Trre16g04949 613 SUPERFAMILY L domain-like 21 202 - -
Trre16g04949 613 FunFam Nuclear pore complex protein NUP107 20 177 - -
Trre16g04949 613 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Trre16g04949 613 Gene3D Phosphorylase Kinase; domain 1 343 413 - -
Trre16g04949 613 ProSiteProfiles Protein kinase domain profile. 337 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04949 613 Gene3D Ribonuclease Inhibitor 182 226 IPR032675 -
Trre16g04949 613 SUPERFAMILY Protein kinase-like (PK-like) 341 607 IPR011009 -
Trre16g04949 613 Pfam Protein kinase domain 341 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04949 613 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 612 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04949 Trre-Chr16 53369992 53371920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04949 6 613 Receptor kinase-like Gene Family AT3G42880 51.111 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre16g04949 Pkinase 7.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04949 - - gmx:100788667 927.546