Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04945 ATGTCGACTTCATCACAATATTCTGCGTTTTCCGGCAACAACAAATCATCAGAGAAATCAACGTTTTCTCAAACTTGTAATCTATTAAGCCAATACATCAAAGAAAAGGGTACTTTCGGAACTCTCTCCCTTCAGAATCCATGCACCCTCCAACCAAATGGATCACCTGATTCATCTTGTTCCGGAACAACAACCATGGATTTCTTTCCAACAAAAGACCTTAAAACTGTGGATTTTTTATCTACAAGTGGATTTAACTCTATTCCTGCTAAAGAGGCTAAAACTGCACAATTGACATTGTTTTATAATGGAGAAGTTATTGTGTTGGATGATTTTCCTGCTTACAAAGTTGAAGAGCTTAAGTCATTTGCTAAACCTCAGATTCAACCACCTTCTCCGCTAATTATTGGAGAACCAACAATTGCTAGAAAAGCTTCACTTCTTCGATTTCTGGAAAAGAGGAAAGATAGAGTTACTCCCAAATCACCATACTCTAAACCAAGCAATTAA 510 0.3706 MSTSSQYSAFSGNNKSSEKSTFSQTCNLLSQYIKEKGTFGTLSLQNPCTLQPNGSPDSSCSGTTTMDFFPTKDLKTVDFLSTSGFNSIPAKEAKTAQLTLFYNGEVIVLDDFPAYKVEELKSFAKPQIQPPSPLIIGEPTIARKASLLRFLEKRKDRVTPKSPYSKPSN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04945 169 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 15 167 IPR040390 -
Trre16g04945 169 Pfam tify domain 93 120 IPR010399 -
Trre16g04945 169 ProSiteProfiles Tify domain profile. 91 126 IPR010399 -
Trre16g04945 169 MobiDBLite consensus disorder prediction 1 20 - -
Trre16g04945 169 Pfam Jas motif 141 165 IPR018467 -
Trre16g04945 169 SMART tify_2 91 126 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04945 Trre-Chr16 53358018 53358895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04945 1 164 Tify Gene Family AT1G19180 37.168 1.39e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre16g04945 tify 6.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04945 K13464 - gmx:100802800 158.688