Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04944 ATGCTTCCACAGAAATTAAGGCATAATCCAATGATGCAACACTCTCTCTACCACCACCCTGCTCTTATCACTCCTCCACAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTGTATGTCGGCAACATTCATCCTCAGGTTACAGAACCACTTCTTCAAGAGCTTTTTTCGAGTGCTGGTGCACTTGAAGGGTGCAAGCTTATTCGGAAAGAGAAGTCATCATATGGCTTTGTGGACTACTTTGATCGCAGTTCAGCTACAATTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGACAGGCTATTAAAGTTAACTGGGCTTATGCTCGTGGCCAAAGAGAAGACACGTCAGGACACTTCCATATTTTTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACTCTGTATGCTTGCTTCTCCGTGTATTCTAGTTGCTCAGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTATCTTTTCGAAATCAGCAGGAAGCCCAAAGTGCCATAAACGATTTAACTGGTAAATGGCTCGGAAGTAGGCAGATTCGTTGTAATTGGGCCACAAAAGGAGCTAATATCAATGGTGAAAATCAGAGTTCAGATTCCAAAGGTGTTGTGGAGTTAACTGGCAGAACATCTGAAGAAGGGCAGGAAATAACCAGTGATGACGGTCCTGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCCGAGGTTACTTCTGTTGATCTCCATCATCATTTTCATGCCCTCGGTGTTGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGGTACAGTACCCATGGTGAAGCAGCTCTTGCTATACAGATGGGAAATGCTCGGTTTCTGTTTGGCAAACCCATCAAGTGCTCATGGGGTAGCAAGCCAACTCCTCCAGGAACAGCTTCTACCCCTCTTCCCCTGCCAGTTTCTACGCATGTACCAGTGCCAGGGCTTTCACTTGCCGGTCTTGCAGCTTATGAACGCCAGCTGGCTTTGAGCAAAATGAATGGTGCACATGTCCTTCTACAACAGCAGAATCAGCATGCCCTAAAGCAGGCAGCCATGGGAATGGGTGCTGTTGGGGCTGGGTATGGTGCAGGATTCCCTAATGCTGCCGCCACCCAGCACCTTATGTACTATCAGTAA 1242 0.4654 MLPQKLRHNPMMQHSLYHHPALITPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEPLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRSSATIAIVTLNGRNIFGQAIKVNWAYARGQREDTSGHFHIFVGDLSPEVTDATLYACFSVYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANINGENQSSDSKGVVELTGRTSEEGQEITSDDGPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAALAIQMGNARFLFGKPIKCSWGSKPTPPGTASTPLPLPVSTHVPVPGLSLAGLAAYERQLALSKMNGAHVLLQQQNQHALKQAAMGMGAVGAGYGAGFPNAAATQHLMYYQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04944 413 SUPERFAMILY RNA-binding domain, RBD 125 220 IPR035979 GO:0003676
Trre16g04944 413 FunFam Oligouridylate-binding protein 1C 229 330 - -
Trre16g04944 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Trre16g04944 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Trre16g04944 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Trre16g04944 413 MobiDBLite consensus disorder prediction 228 248 - -
Trre16g04944 413 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 329 - -
Trre16g04944 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Trre16g04944 413 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Trre16g04944 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Trre16g04944 413 CDD RRM2_PUB1 130 209 - -
Trre16g04944 413 Gene3D - 235 330 IPR012677 -
Trre16g04944 413 Gene3D - 128 234 IPR012677 -
Trre16g04944 413 SUPERFAMILY RNA-binding domain, RBD 245 330 IPR035979 GO:0003676
Trre16g04944 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Trre16g04944 413 SMART rrm1_1 253 322 IPR000504 GO:0003723
Trre16g04944 413 SMART rrm1_1 132 205 IPR000504 GO:0003723
Trre16g04944 413 SMART rrm1_1 47 116 IPR000504 GO:0003723
Trre16g04944 413 SUPERFAMILY RNA-binding domain, RBD 29 126 IPR035979 GO:0003676
Trre16g04944 413 Gene3D - 11 127 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04944 Trre-Chr16 53351167 53355440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04944 47 326 Eukaryotic Initiation Factors Gene Family AT2G23350 31.615 1.21e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04944 K13201 - gmx:100813736 703.745