Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04940 ATGGCGACTACTCAGCTCACTGCATCATCGATTTCTACAAGGAATTTGTCATCCTTTGAAGGGTTTCGAACTTCTGCAATTCAATTTCCTCGTAACAATGCTAGAATTGGCATTCTATCACAAAGATCGTTCCCGTCTATGGTTGTTAAAGCTGCTGCCACAGTTGTTACTCCCAAGCATACCACTGTCAAGCCACTAGGTGATAGAGTACTGGTAAAAATTAAGGATGCAGAAGAGAAAACTGTAGGTGGAATTATACTTCCATCAACTGCTCAGTCAAAGCCTCAAGGGGGTGAGGTAGTTGCTGTTGGAGAAGGGAAGACAGTTGGGAAGAGCAAAGTTGAAATTAGTGTGAAGGCAGGTGCACAAGTTGTGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCAAAACATCTTATACTGAAGGATGATGACATTGTTGGTATCCTTGAAACCGAGGAGGTCAAGGATCTTAAACCCTTGAATGATAGAGTCTTGATAAAGGTTGCAGAAGCCGAGGAAAAAACTGCTGGTGGTTTGTTGCTCACAGAGGCCACCAAGGAGAAACCATCCATTGGCACTGTGATAGCAGTTGGTCCAGGGCCTGTGGATGATGAAGGCAACCGAAAACCATTATCCATTACACCCGGGAATACAGTTCTGTACTCCAAATATGCAGGGAATGACTTCAAGGGCAAAGATGGTTCTGACTATATTGCTTTGAGAGCCTCTGATGTCATTGCTATCCTCTCTTAG 765 0.4392 MATTQLTASSISTRNLSSFEGFRTSAIQFPRNNARIGILSQRSFPSMVVKAAATVVTPKHTTVKPLGDRVLVKIKDAEEKTVGGIILPSTAQSKPQGGEVVAVGEGKTVGKSKVEISVKAGAQVVYSKYAGTEVEFNGSKHLILKDDDIVGILETEEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPVDDEGNRKPLSITPGNTVLYSKYAGNDFKGKDGSDYIALRASDVIAILS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04940 254 ProSitePatterns Chaperonins cpn10 signature. 63 87 IPR018369 GO:0005524|GO:0006457
Trre16g04940 254 Gene3D GroES chaperonin 156 254 IPR037124 GO:0006457
Trre16g04940 254 Gene3D GroES chaperonin 55 155 IPR037124 GO:0006457
Trre16g04940 254 FunFam 20 kDa chaperonin, chloroplastic 56 155 - -
Trre16g04940 254 PIRSF Cpn21 1 254 IPR017416 GO:0006457|GO:0046914|GO:1901671
Trre16g04940 254 FunFam 10 kDa chaperonin 159 254 - -
Trre16g04940 254 Hamap Co-chaperonin GroES [groES]. 62 154 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre16g04940 254 Pfam Chaperonin 10 Kd subunit 161 252 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre16g04940 254 Pfam Chaperonin 10 Kd subunit 63 152 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre16g04940 254 Hamap Co-chaperonin GroES [groES]. 160 254 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre16g04940 254 PANTHER 10 KDA HEAT SHOCK PROTEIN 158 252 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre16g04940 254 CDD cpn10 161 253 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre16g04940 254 PRINTS 10kDa chaperonin signature 119 131 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre16g04940 254 PRINTS 10kDa chaperonin signature 140 153 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre16g04940 254 PRINTS 10kDa chaperonin signature 63 78 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre16g04940 254 PRINTS 10kDa chaperonin signature 85 106 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre16g04940 254 SUPERFAMILY GroES-like 61 154 IPR011032 -
Trre16g04940 254 SMART Cpn10_2 160 253 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre16g04940 254 SMART Cpn10_2 62 153 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre16g04940 254 ProSitePatterns Chaperonins cpn10 signature. 161 185 IPR018369 GO:0005524|GO:0006457
Trre16g04940 254 SUPERFAMILY GroES-like 160 253 IPR011032 -
Trre16g04940 254 CDD cpn10 62 153 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04940 Trre-Chr16 53329591 53331422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04940 1 254 Calmodulin-binding Proteins AT5G20720 73.438 1.14e-132 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04940 K04078 - gmx:100804915 395.971