Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04939 ATGAAGGCTCCATCCAATGGCTACTTGCCTAATTCTGGAGAAGGAGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTCGTGGTTTACTTCCCTCAAGGACATAGTGAGCAAGTTGCAGCTTCAATGCAAAAGCAGACTGACTTCATACCGAGTTACCCTAACCTTCCTTCCAAGTTGATTTGCATGCTTCACAGTGTTGCCCTACATGCTGATCCTGAAACCGACGAGGTCTATGCACAGATGACCCTTCAACCTGTAAACAAATATGACAAGGAAGCAATACTGGCATCAGATTTTGGTCTCAAACAAAACCGTCAACCTACTGAATTCTTTTGCAAGACTCTAACAGCTAGTGACACAAGTACTCATGGTGGATTTTCTGTTCCTCGTAGAGCAGCTGAGAAAATATTCCCGCCTTTGGATTTTTCAATGCAACCTCCCGCTCAGGAGCTTGTTGCTAAAGATTTGCATGACAATACGTGGGCATTTAGACATATTTATCGGGGACAACCAAAGAGGCATTTATTAACTACTGGTTGGAGTGTATTTATCAGCACAAAAAGACTTTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCAACTGCTTTTAGGTTTGAGGCGTGCTAATAGACAGCAGCCAGCGCTTTCTTCATCAGTAATCTCCAGTGACAGTATGCATATTGGCATTTTAGCTGCTGCAGCTCATGCTGCTGCAAATAACAGTCCGTTTACTATATATTACAATCCAAGGGCCAGTCCTTCTGAATTTGTTATTCCGTTGGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACGGAGGAGTCTGGTGTACGTCGATATATGGGTACAGTTACTGGAATTAGTGACTTGGATCCTGTCCGATGGAAAAATTCACAATGGCGCAATCTTCAGATTGGATGGGATGAATCAACAGCTGGTGAACGCCCAAGCAGAGTCTCAATATGGGACATTGAACCAGTAGTGACTCCTTTCTATATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCTGGAATGCCAGATGACGAATCTGATGTCGAAAATGCTTTCAAGAGAGCCATGCCCTGGCTTGGAGATGACTTTGGCATGAAGGACGCCTCAAGTTCAGGGTTCCCTGGTTTGAGTTTAGTCCAGTGGATGCAAATGCAGCAGAATAATCAGTTTTCAGCTGCTCAATCAGGATGTTTCCCATCCATGCTCTCAGTCTCATCTAATACTCTGCATGGTAATCTTAGCACCGATGACCCATCCAAATTACTAAGTTTCCAAGCTCCAGGCCTCTCTGCACCAAGTCTTCAATTTAACAAACCTAATTTACCAAATCAAACCAACCAAATGCATCAGTCCCCAGCATCATGGCCTCAGCAGCAACAACAGTTACAGCAGCGGCAACAGCAACAACAACAACAATTACAGCAGCAGCAGCAACAACAACAACAGCTACAGCAACAGCAACAACAACAACAACAACAACAACAGCTACAGCAGCAACAACAGCAGCAGCTGCAGTCATTGTCGCAAATACCAATGAACCAGTTCCAGCAGCAGAGACAACAGCAGCTGCCTGAATCACAAAACCTGACTCTGCTACAACAGCAAATGTCTCAGCAGCTAGGACAGCAGCCACAGAAGCAGCCACAGTCATCTCAACATGCTATTTTGAATAATGGTGTAGTTGCTTCTAACCAGAATACAAATCAGTTTGCACAGCAGCAAACACTAGCTTATGCTCAGCTTCAGCAAAAACAACAATTGCTCCCGGGAAGTATCCCACTCCAACAAAGTATCCAATCAGCCAGTAAGAATACATTCCCACTGACATCCCTACCACAAGACTCACAATTTCACCAACATATAGACCAGCAAGCAAGTCTCTTACAGAGGCAGCAACAACAAACACAATTACAACAATCTTCACTGCAGGCGTTACAACAAAGCCAGCCACAGTGGGTGCCACCAAACCTTCCAGTGACTCAAATGTCTCAACAAAACACTTCGGACCAACAGCTGCAGCTACAGTTTTTGCACAAATTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAACAACAACAACAACAACTCCATTCGACGTCTAGCCCACTATTGCAATCTCAGCTTCTACAGAAACAAAGTACTCACCAACAAAACCAGCAATTACCGCAGATCCCTATATCCCAACATCATAATCAACAGCTTGGCAATAATGCATTTCCAATGGAGAAGCGTCTCAACAGCAACAATTTGTCTTCTTCATCTCTTATGCAATCACAGCAGCTTTCTGTGAATCAAACCCCGAATACGCACAAGCCACGCACAATTACTAGAGTTCCCTCTACACTTACAGATGGAGAGGCTCCATCATGCTCAACTTCACCATCTACTAATAACTGCCAGATATCTCAACCAAATCTCCTGAAAAGAAATCAACAAGTACAAACTACAATAGGCGGGATCTTGGTAGTGGAGCCTGCCAATAATCTGATGCAGGACCTTCAGAGCAAGTCTGACATGCCTGTCAAACAAGAGTTCTCAAATGTAAAAGGATCTGACCAACTAAAGTATAAGGGGGCTACTACTGATCAGCTCGAAGCTTCGTCTGGAACATCTTACTGTCTGGATCCTGGTAATGTCCAGCAGAGTTTGCCATTATCCAACTTCTGCATGGAAAGCGATGTCCAATCGAACCCTCGAAACACTCTGCCATTTGAATCTAATTTTGATGGTCTAATGTCTGATGCTATGCTTTCTAGGGGTTATGACTCTCAAAAAGATCTTCAAAATTTGTTGGCTAATTATTGTGGTGCTCCGGGAGATATTGAACCCGAGCTGTCCACCGCTGACATCAGCTCACAGTCATTTGGATTACCTGACATGGCTTTTAAGCCTGGTTGCTCGAATGACGTTGGCATTGATGACACTTCTGGGGTTTTGAACAATGGCGTGCGGGCAAACCAAACTCAACGAATGCGAACATACACTAAGGTTCAAAAGCGTGGCTCTGTCGGAAGATGTATTGATGTAACCCGCTACAAGGGATATGATGAACTCCGGTATGATTTGGCACGAATGTTTGGAATTGAAGGGCAACTGGAAGATCCTCAAAGGACTGACTGGAAATTAGTATACGTCGATCATGAGAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAGGAATTTGTAAGCTGTGTTCAGAGTATAAAGATATTATCATCAGCTGAGGTGCAGCAAATGAGCTTGGATGGAGATTTAGGTGGTAATGTTCCAATCCCAAATCAAGCATCCAGTGGGACAGATAGTGGCAATGCATGGAGAGGACAGTATGATGATAATTCTGCAGCCTCGTTCAATAGGTGA 3495 0.4401 MKAPSNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHSVALHADPETDEVYAQMTLQPVNKYDKEAILASDFGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDVENAFKRAMPWLGDDFGMKDASSSGFPGLSLVQWMQMQQNNQFSAAQSGCFPSMLSVSSNTLHGNLSTDDPSKLLSFQAPGLSAPSLQFNKPNLPNQTNQMHQSPASWPQQQQQLQQRQQQQQQQLQQQQQQQQQLQQQQQQQQQQQQLQQQQQQQLQSLSQIPMNQFQQQRQQQLPESQNLTLLQQQMSQQLGQQPQKQPQSSQHAILNNGVVASNQNTNQFAQQQTLAYAQLQQKQQLLPGSIPLQQSIQSASKNTFPLTSLPQDSQFHQHIDQQASLLQRQQQQTQLQQSSLQALQQSQPQWVPPNLPVTQMSQQNTSDQQLQLQFLHKLQQQQQQQQQQQQQQQQQQQQQLHSTSSPLLQSQLLQKQSTHQQNQQLPQIPISQHHNQQLGNNAFPMEKRLNSNNLSSSSLMQSQQLSVNQTPNTHKPRTITRVPSTLTDGEAPSCSTSPSTNNCQISQPNLLKRNQQVQTTIGGILVVEPANNLMQDLQSKSDMPVKQEFSNVKGSDQLKYKGATTDQLEASSGTSYCLDPGNVQQSLPLSNFCMESDVQSNPRNTLPFESNFDGLMSDAMLSRGYDSQKDLQNLLANYCGAPGDIEPELSTADISSQSFGLPDMAFKPGCSNDVGIDDTSGVLNNGVRANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGGNVPIPNQASSGTDSGNAWRGQYDDNSAASFNR 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04939 1164 Coils Coil 715 739 - -
Trre16g04939 1164 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 599 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre16g04939 1164 MobiDBLite consensus disorder prediction 786 847 - -
Trre16g04939 1164 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre16g04939 1164 ProSiteProfiles PB1 domain profile. 1036 1129 IPR000270 GO:0005515
Trre16g04939 1164 FunFam Auxin response factor 289 361 - -
Trre16g04939 1164 Coils Coil 497 541 - -
Trre16g04939 1164 Gene3D - 289 360 - -
Trre16g04939 1164 Gene3D - 124 227 IPR015300 -
Trre16g04939 1164 SMART B3_2 126 228 IPR003340 GO:0003677
Trre16g04939 1164 MobiDBLite consensus disorder prediction 1128 1164 - -
Trre16g04939 1164 CDD B3_DNA 125 217 IPR003340 GO:0003677
Trre16g04939 1164 MobiDBLite consensus disorder prediction 469 500 - -
Trre16g04939 1164 FunFam Auxin response factor 1031 1125 - -
Trre16g04939 1164 Pfam AUX/IAA family 1030 1122 IPR033389 -
Trre16g04939 1164 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Trre16g04939 1164 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Trre16g04939 1164 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Trre16g04939 1164 MobiDBLite consensus disorder prediction 1135 1164 - -
Trre16g04939 1164 SUPERFAMILY CAD & PB1 domains 1049 1114 - -
Trre16g04939 1164 Gene3D - 1031 1125 - -
Trre16g04939 1164 FunFam Auxin response factor 124 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04939 Trre-Chr16 53321688 53327780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04939 1 492 B3 DNA Binding Superfamily AT5G20730 81.400 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre16g04939 AUX_IAA 2e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04939 K14486 - gmx:100816054 1627.45