Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04936 ATGCAATCACTAATACTCTTTCTCTTGTTTATTTCACCATTGTTTCTTCCATTCTCAACCGCGGCCGGAAAAACACCGCAAGATCTCCTCCGTTCATCATGTGCACAAGCAAGATACCCAACACTTTGTGTCCAAACACTCACAAACCAAGTAACTCCGACCACAAAGCCATTAGACCTAGCTCAAGCCGCCGTAAAAGCCAGTCTCACTCGAACTCTAACTCTTTCCGTTTACCTCAAAAACACCCTAAAATCACAGGTGAAACCGGCGGTGGAGTCGACCACCAGTAACAGAAAACGAGTTGCCCTAAATGATTGTGTTAATCAAATTACTGATTCGGTTTCTGAGTTAAACCAGACATTAAACGAGTTAAAGCATCTTCATATGGGAACATTTGAGTGGCAAATAAGTAATGCTCAAACATGGGCTAGTACTGCTATAACAAATGGTAACTTATGTGTTAATGGTTTAAATAGGAAAGGTGCTGAAGAGAAGGTGAAGATGGAAGTGAAACGTAGGGTTAAGGATGTTTCTATGTTTACTAGTAATGCTCTTTACTTTATCAGTCGACTTGGTGAAAGTAGGAATCCAAAACCTCACTCAAATTCTAAGAACTAA 618 0.4029 MQSLILFLLFISPLFLPFSTAAGKTPQDLLRSSCAQARYPTLCVQTLTNQVTPTTKPLDLAQAAVKASLTRTLTLSVYLKNTLKSQVKPAVESTTSNRKRVALNDCVNQITDSVSELNQTLNELKHLHMGTFEWQISNAQTWASTAITNGNLCVNGLNRKGAEEKVKMEVKRRVKDVSMFTSNALYFISRLGESRNPKPHSNSKN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04936 205 SMART PMEI_2 25 187 IPR006501 GO:0004857
Trre16g04936 205 NCBIfam pectinesterase inhibitor domain 3 190 IPR006501 GO:0004857
Trre16g04936 205 Coils Coil 107 127 - -
Trre16g04936 205 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 192 IPR035513 -
Trre16g04936 205 CDD PMEI-like_3 32 191 - -
Trre16g04936 205 PANTHER PECTINESTERASE INHIBITOR-LIKE 4 185 - -
Trre16g04936 205 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 191 IPR035513 -
Trre16g04936 205 Pfam Plant invertase/pectin methylesterase inhibitor 29 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04936 Trre-Chr16 53242624 53243241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04936 29 191 Carbohydrate Esterase AT3G14310 29.697 6.97e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04936 - - mtr:25494163 283.878