Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04930 ATGGACGACGCCGGAGTGTCCAAATTAACTGCTAAGTTGAAGGAAATATTTCAAAAGTGGCAATTAGGCTCTAAAGAGTGCAATGATGAACAACATTCTGATGTGAATCATGGTGGCATATCACCAATGATTAACAAAAGGTTAAACAGTTTAGTATACTGTGATTCTGATGAAGATAGTTGTTGCAATAGTCCTAAACCACCACATGATGTTCCTAAAGGGTACTTAGCTGTTTATGTTGGACCAGAACTTAGAAGATTCATCATTCCAACAAGCTACCTTGGTCATTCTCTTTTCAAAATGTTGTTGGAAAAAGCTGCTGATGAATTTGGTTTTGATCAGAGTGGTGGACTTACAATTCCATGTGAAATTGAGACCTTTAAATACCTTCTCAACTGCATGGAGAGTACTCAGCTTCATGATGATGATGATGATGATGACACCTCTGCTGGAAACAAAAGAACTTTGGAAGAGGGAATAAACTAA 486 0.3765 MDDAGVSKLTAKLKEIFQKWQLGSKECNDEQHSDVNHGGISPMINKRLNSLVYCDSDEDSCCNSPKPPHDVPKGYLAVYVGPELRRFIIPTSYLGHSLFKMLLEKAADEFGFDQSGGLTIPCEIETFKYLLNCMESTQLHDDDDDDDTSAGNKRTLEEGIN 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04930 161 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 54 130 IPR003676 GO:0009733
Trre16g04930 161 Pfam Auxin responsive protein 56 133 IPR003676 GO:0009733
Trre16g04930 161 MobiDBLite consensus disorder prediction 146 161 - -
Trre16g04930 161 MobiDBLite consensus disorder prediction 140 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04930 Trre-Chr16 53198209 53200767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04930 1 158 Calmodulin-binding Proteins AT3G43120 58.434 6.50e-61 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04930 K14488 - gmx:100795275 223.402