Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04929 ATGGTTCATATTGAAACTGGAGCGAAATTATTGTCTACACTAACACTACTGTCTCTCTTCCACCTTATGATCCCAATAATCCCAACATTTTCTGAATCAAACCTATTAGATGACCATTTAAAAGCCGCGGAGGTCGACGGTGCTGTTAGAGTGGTGAGAGTTAGGAAAGACGGAACCGGAGATTTTAAGACGATAACGGACGCCGTCAACAGCATTCCATCGGGGAACATGAGAAGAGTGGTGGTTTGGATTGGTATGGGAGAATATAGAGAGAAGATAACGGTTGATATGTCTAAACGTTTTGTAACGTTTTATGGGGAAAGGAATGGGAATGAATATGACTTAATGCCCATTATAACGTACCACGCAACCGCTTTACATTATGGGACACTTGATAGTGCAACCGTCGCTGTTGATGCTGATTACTTTGTCGCTGTCAATGTTGCTTTTGTGAATTCGTCTCCTATGCCAAATGAAAATAGTGTTGGAGGACAAGCGTTAGCTATGAGGATATCGGGGGACAAGGCCGCGTTCTATAATTGCAAGTTTATTGGATTTCAAGATACTTTGTGTGATGACAAAGGCAGACATTTTTTTAAGGATTGCTATATTCAAGGAACCTATGATTTCATCTTTGGAAATGGAAAATCAATCTACTTGAGAACTACCATAGAATCGGTTGCAAAGGGTTTGAATGTTATAACAGCACAAGGTAGGCAAAGCATATCAGAAGACACCGGATTCACTTTTGTGCATTGCAACATAACCGGAAGTGGCCACAGGAACACTTATCTTGGGCGTGGTTGGAGGAGGAGCCCTAGGGTAGTATTTGCCTATACCTTTATGGACTCTAATGTCAATTCCAGAGGATGGTACCACCATGAATCCAATGAGACAATCTATTTTGGAGAATATAAGTGCATTGGACCAGGTGCTGCTTCCTCTGCAAGTAGGTTAAAATATCAAAGGATACTATCTGATGAAGAAGCTAAACCCTTCTTGAGCATGGCTTATATTCATGGAGAACAGTGGGTTCGCCCACCTCCCAAGCTGTAA 1056 0.4176 MVHIETGAKLLSTLTLLSLFHLMIPIIPTFSESNLLDDHLKAAEVDGAVRVVRVRKDGTGDFKTITDAVNSIPSGNMRRVVVWIGMGEYREKITVDMSKRFVTFYGERNGNEYDLMPIITYHATALHYGTLDSATVAVDADYFVAVNVAFVNSSPMPNENSVGGQALAMRISGDKAAFYNCKFIGFQDTLCDDKGRHFFKDCYIQGTYDFIFGNGKSIYLRTTIESVAKGLNVITAQGRQSISEDTGFTFVHCNITGSGHRNTYLGRGWRRSPRVVFAYTFMDSNVNSRGWYHHESNETIYFGEYKCIGPGAASSASRLKYQRILSDEEAKPFLSMAYIHGEQWVRPPPKL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04929 351 Pfam Pectinesterase 52 341 IPR000070 GO:0030599|GO:0042545
Trre16g04929 351 SUPERFAMILY Pectin lyase-like 51 347 IPR011050 -
Trre16g04929 351 Gene3D - 48 348 IPR012334 -
Trre16g04929 351 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 48 346 - -
Trre16g04929 351 FunFam Pectinesterase 47 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04929 Trre-Chr16 53193147 53195408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04929 36 351 Carbohydrate Esterase AT5G07410 50.157 1.68e-115 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04929 K01051 - gmx:100790786 515.768