Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04924 ATGGGAAGAGAAGCACCAAAGCCGCAACAACAACAAGGACAAGGAACTGCTTACACTGTTGAGCAGCTCGTTGCATTGAATCCCTACAATCCTGATATTCTTCCAGATCTCGAAAACTATGTCAATGATCAGGTTTCATCAGAGACATATAGTCTCGAATCAAATCTCTGCCTCCTTCGTCTCTACCAGTTTGAGCCTGAGAAAATGAGTTCTCAGATTGTAGCTCGCATATTGGTTAAGGCCCTCATGGCTATGCCGGCTCCGGACTTCAGCCTGTGTCTCTTTTTGATTCCGGAACGTGTGCAAATGGAGGAGCAGTTCAAGACACTGATTGTGCTATCTCACTATTTGGAGACTGGAAGGTTTCGTCAGTTCTGGGACGAAGCTGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCTGGATTTGAGCAGGCAATCCAAGGCTATGCAATTCATGTCCTATCCTTGACTTACCAAAAGATTCCCAGAACTGTGCTTGCTGAGGCTATCAACATAGAAGGTTTAGCCTTGGACAAATTCCTTGAACACCAAGTAGCCAACTCTGGTTGGGTTATTGAGAAAAGCCAGGGCAGGGGTCAACTCATTGTCCTTCCCAGAGATGAATTTAATGATCCAATTTTGAAGAAAAACACTGCAGATAGTGTACCATTCGAGCACGTTACTCACCTCTTATCTATTCTCAGTTGA 708 0.4449 MGREAPKPQQQQGQGTAYTVEQLVALNPYNPDILPDLENYVNDQVSSETYSLESNLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGYAIHVLSLTYQKIPRTVLAEAINIEGLALDKFLEHQVANSGWVIEKSQGRGQLIVLPRDEFNDPILKKNTADSVPFEHVTHLLSILS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04924 235 Gene3D ARM repeat; domain 1 14 128 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
Trre16g04924 235 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 8 232 IPR009374 GO:0003743|GO:0005737|GO:0005852
Trre16g04924 235 FunFam Eukaryotic translation initiation factor 3 subunit K 10 128 - -
Trre16g04924 235 Gene3D - 131 234 IPR036388 -
Trre16g04924 235 FunFam Eukaryotic translation initiation factor 3 subunit K 131 234 - -
Trre16g04924 235 Pfam CSN8/PSMD8/EIF3K family 70 196 IPR033464 -
Trre16g04924 235 SUPERFAMILY "Winged helix" DNA-binding domain 140 232 IPR036390 -
Trre16g04924 235 SUPERFAMILY ARM repeat 16 137 IPR016024 -
Trre16g04924 235 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 11 235 IPR009374 GO:0003743|GO:0005737|GO:0005852
Trre16g04924 235 ProSiteProfiles PCI domain profile. 50 209 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04924 Trre-Chr16 53108344 53110384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04924 1 235 Eukaryotic Initiation Factors Gene Family AT4G33250 72.766 9.02e-127 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04924 K15028 - gmx:100306445 409.838