Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04916 ATGGCATTTCAAGATTTCGACCTCATCACAGAACGGCGAAAAAGTGAGAAGAGACAACAACTGAAGAAAAGAATCCTCATCGGTGTTGTTTCTACCGTTGTCCTCGCCGGTCTGATAGGTTGTGCATTCTTCGTTGTCACCTCAAAACACGGCGTTTTAGGTGGTAGCAATACGAAGGAAGAATCTTCTCAAAATTCTAAGGAGGGTAGCAAACAACATATTGTACATTCAGAAAGGATAGTGAAATTGGTATGCAGTTCTGCAGATTACAAAGAAAAATGTGAAGGACCTCTTAACAAAGCAGTGGACGCGGATCCTAAACTTCAACACCCTAAAGATCTTCTCAAAGCATATATTAAAGTTGTTGAAGGTGAGGTTACCAAAGCTTTCGACAAAACAAACACATTCAAATTTGAATCTGAACAAGAGAAAGGTGCATTTGAGGATTGTAAAAAGCTATTTACAGATGCTAAAGATGATTTACAAACCTCTATTGATCAACTTACTACAATTGAATTCAAGAAACTTTCTTCAAAAGCACCTGACTTGAATAGTTGGTTGAGTGCCGTTATCTCTTTTCAACAAACTTGTGTTGATGGTTTTCCTGAAGGAAAAATGAAGACTAATCTCCAGAATCTTTTTAAGGATTCTAGGGAATTTGTTAGCAATTCACTTGCTATGGTCACTCAAGTTTCTACATTCCTTTCTACGGTTCAGACCCTCGCACGCGGCCGTTTGTTGTTGTCTGATAACTCTCCTGTTGCTTCTTTGGATTCTGAAGGCATTCCTTCATGGATCCACGCCGAGGAAAGAAGGGTGTTGAAGGCTGCTGATAATAGACCTACACCTAATGTCACTGTTGCAAAAGATGGTAGTGGTGACTTCAAAACCATCTCCGAAGCTTTAGCCGCAATTCCTAAAACTTATACCGGAAGGTATGTGGTTTTTGTTAAAGAAGGAGTATACGACGAGCAGGTGACAGTAACAAAGAAAATGCAAAATGTAACCATGTATGGTGAGGGATCACAAAAGAGTATCATCACTGGTAGCAAAAACTTTAGGGATGGAGTCAGGACCTTCCTAACTGCAAGTTTTATGGTAGAAGGAGATGGATTTTTGGGACTAGCAATGGGATTCAGAAACACAGCTGGTCCTGATGGACATCAAGCAGTGGCTGCGAGAGTACAAGCGGATCGCGCTGTGTTTGCCAACTGTCGTTTCGAAGGGTACCAAGACACACTATATACACAAGCACACAGACAATTTTACCGTAGTTGTATCATAGCAGGAACAATTGATTTCATCTTCGGAGACGCAGCAGTTGTATTCCAAAATTGCATCATGATGGTTAGAAAACCAATGGACAATCAAGGTAACATGGTGACAGCACAAGGTAGAATGGACAAACAACAAACAACAGGAACTGTTCTACAAAAATGTCAAATTAAAGCCGACGACGCAATGTTGGCCGTTAAAGATAAAATAAAAAGTTACCTTGGTAGACCATGGAAGGAATTTTCTAGAACAATTGTTATGGAAAGTGAAATAGGTGATTTTATTCACCCTGATGGATGGACACCTTGGGAAGGAAACTTTGCATTGAATACATTGTATTATGCTGAGTATAATAACACAGGACCTGGTGCTAGTACTAGTGCTAGAGTTAAGTGGCCTGGTTACAAAGTGATTAACAAAGAAGAAGCTAGTAAGTACACTGTAGGAAATTTCTTGAAAGGTTCATGGGTTCAATCCACAGGTGTACCTTCACAGCAGGGATTGTACAATTGA 1788 0.4004 MAFQDFDLITERRKSEKRQQLKKRILIGVVSTVVLAGLIGCAFFVVTSKHGVLGGSNTKEESSQNSKEGSKQHIVHSERIVKLVCSSADYKEKCEGPLNKAVDADPKLQHPKDLLKAYIKVVEGEVTKAFDKTNTFKFESEQEKGAFEDCKKLFTDAKDDLQTSIDQLTTIEFKKLSSKAPDLNSWLSAVISFQQTCVDGFPEGKMKTNLQNLFKDSREFVSNSLAMVTQVSTFLSTVQTLARGRLLLSDNSPVASLDSEGIPSWIHAEERRVLKAADNRPTPNVTVAKDGSGDFKTISEALAAIPKTYTGRYVVFVKEGVYDEQVTVTKKMQNVTMYGEGSQKSIITGSKNFRDGVRTFLTASFMVEGDGFLGLAMGFRNTAGPDGHQAVAARVQADRAVFANCRFEGYQDTLYTQAHRQFYRSCIIAGTIDFIFGDAAVVFQNCIMMVRKPMDNQGNMVTAQGRMDKQQTTGTVLQKCQIKADDAMLAVKDKIKSYLGRPWKEFSRTIVMESEIGDFIHPDGWTPWEGNFALNTLYYAEYNNTGPGASTSARVKWPGYKVINKEEASKYTVGNFLKGSWVQSTGVPSQQGLYN 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04916 595 FunFam Pectinesterase 278 593 - -
Trre16g04916 595 CDD PMEI-like_3 83 233 - -
Trre16g04916 595 Pfam Pectinesterase 284 579 IPR000070 GO:0030599|GO:0042545
Trre16g04916 595 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 232 IPR035513 -
Trre16g04916 595 Gene3D - 279 593 IPR012334 -
Trre16g04916 595 NCBIfam pectinesterase inhibitor domain 77 231 IPR006501 GO:0004857
Trre16g04916 595 FunFam Pectinesterase 77 232 - -
Trre16g04916 595 Pfam Plant invertase/pectin methylesterase inhibitor 81 227 IPR006501 GO:0004857
Trre16g04916 595 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Trre16g04916 595 SMART PMEI_2 76 227 IPR006501 GO:0004857
Trre16g04916 595 SUPERFAMILY Pectin lyase-like 281 591 IPR011050 -
Trre16g04916 595 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 231 IPR035513 -
Trre16g04916 595 PANTHER PECTINESTERASE 39 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04916 Trre-Chr16 53019515 53021564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04916 1 595 Carbohydrate Esterase AT2G26450 47.200 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04916 - - gmx:100784679 919.072