Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04915 ATGGCTAATTTAACTTTTAAACTCTTCCTTCTTCTCTTAACAATCTTCCACTCAAACACTTTAGCTTTCAACTTCTCTGATTCTTCCACAAAAACACTACATGCAAAGATATCTTCATTAAAATCCTTCTGCAAAACTACTCCATACCCTGAACTTTGTTTCAATTCATCAAAACTATCAATCTCAATAAACATAAGTCCAAACATCATTAGCATCCTTCTTAACTCCCTTCAAGTAGCAATATCTGAAACAACAAAACTATCTAATCAATTCAACAATGCTAAACAACATTCAAACATCATAGAGAACAAAAGAGGAGTGTTACAAGATTGCAAAGAACTTCAACAATCTACTTTGACTTCTTTAAAAAGATCATTGTCTGGAATTAGTTCCTCAAACTCTAGAAAGTTAGTTGATGCAAGAACATATCTCAGTGCAGCACTTACTGACAAGAATACATGTTTAGAAAGCTTAGATTCTGCTTCTGGTACAATGAAGCAAGTTCTAGTGGATTCGGTGATCGACACTTACAAGCATGTTAGTAATTCTCTGTCAATGCTCCCTGAGCCTGAGGAAAGAGCTTCGAAAGGACGTGGTAATCGGCGTTTAATGGATGCTCTAACGTGGTTGTCAAGAAAAGATCACCGCCGGTTCTTGCAAAGTACAAATGATGTAGTTGTGGCTGCAGATGGAAGTGGAAACTTTAGCACTATTAATGAAGCCATTAACTTTGCTCCAAATAACAGCTATGATAGGATAATAATCTATGTGAAAGAAGGAGTGTATGAGGAAAATGTTGAAATCACAAGTGATAAAACCAATATTGTTTTACTTGGTGATGGAAGTGATGTCACTCTCATTACTGGCAATAGAAGTGTTGTTGATGGCTGGACCACTTTCAGATCTGCAACTTTAGCGGTCTCCGGTGAAGGTTTTCTGGCACGGGATATAGCTTTCGAGAACAAGGCAGGACCAGAGAAGCATCAAGCAGTTGCATTAAGAGTGAATGCAGACTTAACAGCTTTTTACAAATGTGCAATGTATGGTTACCAAGACACACTTTATGTTCATTCCTTTAGACAATTCTATAGAGAATGTGACATTTTTGGTACCATAGATTACATATTTGGTAATGCAGCAGTAGTTTTACAAGCATGTAACATTGTTTCAAGAAAGCCATTACCACATCAATTCACTGTCATCACTGCACAAGCCAGAGATTCCCCTGATGAAGACACTGGCATCTCAATCCAAAATTGTTCAATTTTAGCTACTACTGATTTGTATGACAACTCTAACAACATTAAAAGTTACCTTGGAAGGCCTTGGAGGGTTTATTCTAGGACTGTTTATATTGAGTCTTACATTGATGTGTTTATTGATCCAATGGGATGGACAAAGTGGTCTCATGAAGATGACAATGATGAAGGGTTGAATACTTTGTATTATGGTGAGTATGCAAATTATGGACCTGGTTCAGGAACAGATAAAAGAGTGAAATGGTTAGGGTATCATTTGATGGATTTTGATAGTGCAAATAACTTCACTGTTGCTGAGTTCATTATTGGTGATGCTTGGATTGGATCTACTTCATTCCCTTTTGATGATTGGATTTGA 1617 0.368 MANLTFKLFLLLLTIFHSNTLAFNFSDSSTKTLHAKISSLKSFCKTTPYPELCFNSSKLSISINISPNIISILLNSLQVAISETTKLSNQFNNAKQHSNIIENKRGVLQDCKELQQSTLTSLKRSLSGISSSNSRKLVDARTYLSAALTDKNTCLESLDSASGTMKQVLVDSVIDTYKHVSNSLSMLPEPEERASKGRGNRRLMDALTWLSRKDHRRFLQSTNDVVVAADGSGNFSTINEAINFAPNNSYDRIIIYVKEGVYEENVEITSDKTNIVLLGDGSDVTLITGNRSVVDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADLTAFYKCAMYGYQDTLYVHSFRQFYRECDIFGTIDYIFGNAAVVLQACNIVSRKPLPHQFTVITAQARDSPDEDTGISIQNCSILATTDLYDNSNNIKSYLGRPWRVYSRTVYIESYIDVFIDPMGWTKWSHEDDNDEGLNTLYYGEYANYGPGSGTDKRVKWLGYHLMDFDSANNFTVAEFIIGDAWIGSTSFPFDDWI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04915 538 ProSitePatterns Pectinesterase signature 2. 368 377 IPR033131 -
Trre16g04915 538 CDD PMEI-like_3 42 186 - -
Trre16g04915 538 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 189 IPR035513 -
Trre16g04915 538 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 187 IPR035513 -
Trre16g04915 538 NCBIfam pectinesterase inhibitor domain 6 185 IPR006501 GO:0004857
Trre16g04915 538 Pfam Pectinesterase 224 524 IPR000070 GO:0030599|GO:0042545
Trre16g04915 538 PANTHER PECTINESTERASE 16 528 - -
Trre16g04915 538 SMART PMEI_2 35 186 IPR006501 GO:0004857
Trre16g04915 538 Pfam Plant invertase/pectin methylesterase inhibitor 39 186 IPR006501 GO:0004857
Trre16g04915 538 FunFam Pectinesterase 36 189 - -
Trre16g04915 538 SUPERFAMILY Pectin lyase-like 219 535 IPR011050 -
Trre16g04915 538 Gene3D - 219 537 IPR012334 -
Trre16g04915 538 FunFam Pectinesterase 219 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04915 Trre-Chr16 53016369 53018400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04915 25 538 Carbohydrate Esterase AT2G26440 63.653 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04915 - - gmx:100776969 758.444