Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04907 ATGGGTTTCTACACTCAACAATCCATCTCTAATCTAACCATAAGCCAAGCCATATACGAAGCAGCTCTTATCATAGCAGTTCTCAGATGGATATTCTGCTTAGTTTTCAGAATAATCAACAACAGAAAAACAGAACAAGAACAACATCAACAACAATACTCTTCTTGTTGTCAAATGTTACCTTTGACAAGTTTTGGTGAAATTAAAGAAAGACATCCAGAAACAACAGAAGATTCAACATGTGCTGTTTGTTTGAACAAACTTAAAATGGAAGATGAAGTTAGAGAATTAATGAACTGTGATCATGTTTTTCATAGAGAATGCATAGATAAATGGTTACAACATGGTTATGAAAATGAAAATCATAATCAAACTTGTCCACTTTGTAGAGCTCCTTTGATTAATAGTTTTTCAGTTTCATCTGAGATTTCAAACTGTAGTGGAATTTCTCCTCCTCAACCTAGTTGGGCTGTTGAAAGACTTCTTTATCTCTTTGGAGATGATCTTTTACCTTGTTAA 519 0.3333 MGFYTQQSISNLTISQAIYEAALIIAVLRWIFCLVFRIINNRKTEQEQHQQQYSSCCQMLPLTSFGEIKERHPETTEDSTCAVCLNKLKMEDEVRELMNCDHVFHRECIDKWLQHGYENENHNQTCPLCRAPLINSFSVSSEISNCSGISPPQPSWAVERLLYLFGDDLLPC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04907 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 144 IPR013083 -
Trre16g04907 172 ProSiteProfiles Zinc finger RING-type profile. 81 130 IPR001841 -
Trre16g04907 172 SMART ring_2 81 129 IPR001841 -
Trre16g04907 172 Pfam Ring finger domain 80 130 IPR001841 -
Trre16g04907 172 SUPERFAMILY RING/U-box 73 136 - -
Trre16g04907 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04907 Trre-Chr16 52910313 52910831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04907 1 171 C3H Transcription Factor Family AT3G43430 44.134 7.79e-44 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04907 K16281 - gmx:100306203 226.868