Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre16g04907 | ATGGGTTTCTACACTCAACAATCCATCTCTAATCTAACCATAAGCCAAGCCATATACGAAGCAGCTCTTATCATAGCAGTTCTCAGATGGATATTCTGCTTAGTTTTCAGAATAATCAACAACAGAAAAACAGAACAAGAACAACATCAACAACAATACTCTTCTTGTTGTCAAATGTTACCTTTGACAAGTTTTGGTGAAATTAAAGAAAGACATCCAGAAACAACAGAAGATTCAACATGTGCTGTTTGTTTGAACAAACTTAAAATGGAAGATGAAGTTAGAGAATTAATGAACTGTGATCATGTTTTTCATAGAGAATGCATAGATAAATGGTTACAACATGGTTATGAAAATGAAAATCATAATCAAACTTGTCCACTTTGTAGAGCTCCTTTGATTAATAGTTTTTCAGTTTCATCTGAGATTTCAAACTGTAGTGGAATTTCTCCTCCTCAACCTAGTTGGGCTGTTGAAAGACTTCTTTATCTCTTTGGAGATGATCTTTTACCTTGTTAA | 519 | 0.3333 | MGFYTQQSISNLTISQAIYEAALIIAVLRWIFCLVFRIINNRKTEQEQHQQQYSSCCQMLPLTSFGEIKERHPETTEDSTCAVCLNKLKMEDEVRELMNCDHVFHRECIDKWLQHGYENENHNQTCPLCRAPLINSFSVSSEISNCSGISPPQPSWAVERLLYLFGDDLLPC | 172 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre16g04907 | 172 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 144 | IPR013083 | - | |
Trre16g04907 | 172 | ProSiteProfiles | Zinc finger RING-type profile. | 81 | 130 | IPR001841 | - | |
Trre16g04907 | 172 | SMART | ring_2 | 81 | 129 | IPR001841 | - | |
Trre16g04907 | 172 | Pfam | Ring finger domain | 80 | 130 | IPR001841 | - | |
Trre16g04907 | 172 | SUPERFAMILY | RING/U-box | 73 | 136 | - | - | |
Trre16g04907 | 172 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 23 | 169 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre16g04907 | Trre-Chr16 | 52910313 | 52910831 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre16g04907 | 1 | 171 | C3H Transcription Factor Family | AT3G43430 | 44.134 | 7.79e-44 | 141 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre16g04907 | K16281 | - | gmx:100306203 | 226.868 |