Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04906 ATGTCAACAATAGAAGCTCCTCCTCCTTTCCAAGAAGCAGCACGTTGTGTTGTCTGTAGTTGCAGTTTCAACACCTTCAGGAGACGGCATCACTGCCGATCCTGTGGGAGAACACTGTGCAGTGAACATTCATCAGATCAAATGGCTTTACCACAATTTGGCATTTACTCCAATGTACGTGTATGTGCTGATTGTTTCAACAAGAGATCTGGGAAGGGTGTACCACAAGCTTCTTCAGATGGAGTAAACAGCATAACAGATGCAGTTTCTGAGTTAGATATTGATGCTTCAAAAAGAATACCAACTGCAGATAATAACCTTGCATCAGGCGTTAAAGAGTGTAAGTGTGGAATGCCTCTTTGCATTTGTGTAGCTCCTGCCCCTTCCTCTGATGCACTCCCCCAGAAGAAGTCCAACCCAGTTGTTACAGCTCCATCAAATCCTAAACCTAAGAAGACAGATAATGTTTCAAAAAATAAAAGCTCAAGTTCCACAAACAAGTTTAGTTCTACGTTTAACCCTGGAATTGTATCCGCTGGTGCCTCAAGCAAACCCCAGATTGATTATGAAGTTAATGGAGAGGGTTTACGAGAAGCAATAAAAAATGGTGACATTGCTGCTGTCAAAAAACTTCTTAATGAGGGTGTAGATGCAAATTACAGAGACAAGCAAGGATTGTCTTTATTGCATTTGGCTGCGGTTTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCGGGGGCAAGTCTGGAGTATAAAAATGCTCAAGGAGAAACGCCTTTAGATTGTGCTCCAGCTACACTGCAATACAAAATGCGGAAGAAGATTGAAGAAAGTGGAGCAACGGACCAAAGGATTTGA 864 0.4167 MSTIEAPPPFQEAARCVVCSCSFNTFRRRHHCRSCGRTLCSEHSSDQMALPQFGIYSNVRVCADCFNKRSGKGVPQASSDGVNSITDAVSELDIDASKRIPTADNNLASGVKECKCGMPLCICVAPAPSSDALPQKKSNPVVTAPSNPKPKKTDNVSKNKSSSSTNKFSSTFNPGIVSAGASSKPQIDYEVNGEGLREAIKNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGETPLDCAPATLQYKMRKKIEESGATDQRI 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04906 287 Gene3D - 176 286 IPR036770 -
Trre16g04906 287 SMART fyve_4 2 71 IPR000306 GO:0046872
Trre16g04906 287 CDD FYVE_scVPS27p_like 9 66 - -
Trre16g04906 287 Pfam FYVE zinc finger 11 68 IPR000306 GO:0046872
Trre16g04906 287 SUPERFAMILY Ankyrin repeat 196 276 IPR036770 -
Trre16g04906 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 70 IPR013083 -
Trre16g04906 287 ProSiteProfiles Ankyrin repeat profile. 196 223 IPR002110 GO:0005515
Trre16g04906 287 MobiDBLite consensus disorder prediction 131 168 - -
Trre16g04906 287 SMART ANK_2a 224 253 IPR002110 GO:0005515
Trre16g04906 287 SMART ANK_2a 191 220 IPR002110 GO:0005515
Trre16g04906 287 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 10 70 IPR017455 -
Trre16g04906 287 MobiDBLite consensus disorder prediction 132 168 - -
Trre16g04906 287 SUPERFAMILY FYVE/PHD zinc finger 10 70 IPR011011 -
Trre16g04906 287 ProSiteProfiles Ankyrin repeat region circular profile. 224 255 - -
Trre16g04906 287 Pfam Ankyrin repeats (3 copies) 198 265 IPR002110 GO:0005515
Trre16g04906 287 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 3 281 - -
Trre16g04906 287 ProSiteProfiles Ankyrin repeat profile. 224 256 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04906 Trre-Chr16 52901606 52906158 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04906 203 282 MAP Kinase Kinase Kinase AT3G58760 36.250 1.37e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04906 - - gmx:100814367 470.7