Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04905 ATGTCAACAATAGAAGCTCCTCCTCCTTTCCAAGAAGCAGCACGTTGTGTTGTCTGTAGTTGCAGTTTCAACACCTTCAGGAGACGGCATCACTGCCGATCCTGTGGGAGAACACTGTGCAGTGAACATTCATCAGATCAAATGGCTTTACCACAATTTGGCATTTACTCCAATGTACGTGTATGTGCTGATTGTTTCAACAAGAGATCTGGGAAGGGTGTACCACAAGCTTCTTCAGATGGAGTAAACAGCATAACAGATGCAGTTTCTGAGTTAGATATTGATGCTTCAAAAAGAATACCAACTGCAGATAATAACCTTGCATCAGGCGTTAAAGAGTGTAAGTGTGGAATGCCTCTTTGCATTTGTGTAGCTCCTGCCCCTTCCTCTGATGCACTCCCCCAGGTGAAGAAGTCCAACCCAGTTGTTACAGCTCCATCAAATCCTAAACCTAAGAAGACAGATAATGTTTCAAAAAATAAAAGCTCAAGTTCCACAAACAAGTTTAGTTCTACGTTTAACCCTGGAATTGTATCCGCTGGTGCCTCAAGCAAACCCCAGATTGATTATGAAGTTAATGGAGAGGGTTTACGAGAAGCAATAAAAAATGGTGACATTGCTGCTGTCAAAAAACTTCTTAATGAGGGTGTAGATGCAAATTACAGAGACAAGCAAGGATTGTCTTTATTGCATTTGGCTGCGGTTTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCGGGGGCAAGTCTGGAGTATAAAAATGCTCAAGGAGAAACGCCTTTAGATTGTGCTCCAGCTACACTGCAATACAAAATGCGGAAGAAGATTGAAGAAAGTGGAGCAACGGACCAAAGGATTTGA 867 0.4175 MSTIEAPPPFQEAARCVVCSCSFNTFRRRHHCRSCGRTLCSEHSSDQMALPQFGIYSNVRVCADCFNKRSGKGVPQASSDGVNSITDAVSELDIDASKRIPTADNNLASGVKECKCGMPLCICVAPAPSSDALPQVKKSNPVVTAPSNPKPKKTDNVSKNKSSSSTNKFSSTFNPGIVSAGASSKPQIDYEVNGEGLREAIKNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGETPLDCAPATLQYKMRKKIEESGATDQRI 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04905 288 ProSiteProfiles Ankyrin repeat profile. 225 257 IPR002110 GO:0005515
Trre16g04905 288 SMART fyve_4 2 71 IPR000306 GO:0046872
Trre16g04905 288 CDD FYVE_scVPS27p_like 9 66 - -
Trre16g04905 288 SMART ANK_2a 192 221 IPR002110 GO:0005515
Trre16g04905 288 SMART ANK_2a 225 254 IPR002110 GO:0005515
Trre16g04905 288 SUPERFAMILY Ankyrin repeat 197 277 IPR036770 -
Trre16g04905 288 MobiDBLite consensus disorder prediction 133 169 - -
Trre16g04905 288 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 3 282 - -
Trre16g04905 288 MobiDBLite consensus disorder prediction 131 169 - -
Trre16g04905 288 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 10 70 IPR017455 -
Trre16g04905 288 SUPERFAMILY FYVE/PHD zinc finger 10 70 IPR011011 -
Trre16g04905 288 ProSiteProfiles Ankyrin repeat profile. 197 224 IPR002110 GO:0005515
Trre16g04905 288 Pfam FYVE zinc finger 11 68 IPR000306 GO:0046872
Trre16g04905 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 70 IPR013083 -
Trre16g04905 288 Pfam Ankyrin repeats (3 copies) 199 266 IPR002110 GO:0005515
Trre16g04905 288 Gene3D - 177 287 IPR036770 -
Trre16g04905 288 ProSiteProfiles Ankyrin repeat region circular profile. 225 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04905 Trre-Chr16 52901606 52906158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04905 204 283 MAP Kinase Kinase Kinase AT3G58760 36.250 1.34e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04905 - - gmx:100814367 466.077