Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04904 ATGACTAATACTGATACTATCAATAATGTTGACTTAAACACCATCAGTGATGAAGGCTCTGTCAAGCATTTCTCTGCTAACTGGCCAATGTCAGTGAACCCTGGAACAGCTCAATTTGCTATCGTCTATAATGGAAGTATGTGTGTATATGAAGGAATTTCTGCAGAAAAGATGCATGAAATAATGTTGATGGCTTCTGCCAATGCCAAGTCTTCAGAAATGAAGAGTGGAATTCCCTTCACTTCTCTCTTCTCCACTACTAATAACCCTCCTTCTCCTCCTCAAGGAACCTCTGACAATTTGCCTTCTCCTCAATCAGTCTGTTTTCCTGCTGCTGAGAAGACTTCCATTTGCAGGATGCAAGAATTTCCAATAGCACGCAGACAGTCACTTCAAAGTTTTCTTGAGAAGAGAAGAATGAGGGTACGTAGCAAAGCACCTTACACCTCTTCAACATCAAAAGAAGCTAACAACATAGAGAACAACTTCAACCCAACATTGGTGCCACTTGAGGGCAACTAG 522 0.4138 MTNTDTINNVDLNTISDEGSVKHFSANWPMSVNPGTAQFAIVYNGSMCVYEGISAEKMHEIMLMASANAKSSEMKSGIPFTSLFSTTNNPPSPPQGTSDNLPSPQSVCFPAAEKTSICRMQEFPIARRQSLQSFLEKRRMRVRSKAPYTSSTSKEANNIENNFNPTLVPLEGN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04904 173 MobiDBLite consensus disorder prediction 145 173 - -
Trre16g04904 173 MobiDBLite consensus disorder prediction 80 102 - -
Trre16g04904 173 ProSiteProfiles Tify domain profile. 32 67 IPR010399 -
Trre16g04904 173 Pfam tify domain 34 66 IPR010399 -
Trre16g04904 173 SMART tify_2 32 67 IPR010399 -
Trre16g04904 173 Pfam Jas motif 124 148 IPR018467 -
Trre16g04904 173 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 33 156 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04904 Trre-Chr16 52895139 52897537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04904 38 157 Tify Gene Family AT5G20900 38.017 2.10e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre16g04904 tify 4.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04904 K13464 - gmx:100306655 152.14