Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04903 ATGACATTCCCTTGGGGAGCCCTTGTGACCTCATCATTGCTCTTTCTCGTTGTTGCTTTTTCACTTCCTAATGTCCATGCTATCAACTCCTCATGGAAACATGCAGCTCATAATATTATTGGACCTAATAATCCAATTAGTACCCCAAAACATCATCGGAGATTGTTTTTAGCTGGTCCATGGAAGAAAGCACAAGCCACTTTCTATGATGGTGGCTCAGGAACATTTGGTGGAGCTTGTGGATATGAGGATGTGGTTAAAGATGGTTATGGTTTAGACACAGTAGCATTGAGCACAGTTTTGTTCAACAAAGGTGGAGCATGTGGTGCATGTTATGAAATCAAATGTATGGACTCTCCTCAAGGGTGTAAGCCAGGGCAACCCTCTCTTTTTGTGACGGCAACAGACCTTTGTCCTCCCAATTATGCCCTACCAAGTGACAATGGAGGGTGGTGCAACCCACCACGTGAACACTTTGATTTAGCCAAACCAGCTTATGAAAAAATTGCTGACTGCAAAGCTGGAATTGTGCCAGTCCAATATCGCAGGGTACCGTGCAAGAGGCAGGGAGGTATTCGATTCACAATCACAGGGAATCCTTACTTCAACCTAGTAAAAGTGTCTAATGTTGGAGGATCAGGTGATGTGGTAGGAGTGCAAGTGAAGGGTGAAGGCCAACTGAAATGGACAGAATTGAAGAGAAATTGGGGTCAGAGATGGGAGACTAATGCAATGTTATCTGGAGAGACATTGACCTTCAGAGTGACCACAAGTGATGGAAGGAGCACCCTTTCTAAGGCTGTTGCCCCCAAGGGTTGGCAGTTTGGTCAGACATTTGTAGGCAAAAACTTGGCATAA 858 0.4487 MTFPWGALVTSSLLFLVVAFSLPNVHAINSSWKHAAHNIIGPNNPISTPKHHRRLFLAGPWKKAQATFYDGGSGTFGGACGYEDVVKDGYGLDTVALSTVLFNKGGACGACYEIKCMDSPQGCKPGQPSLFVTATDLCPPNYALPSDNGGWCNPPREHFDLAKPAYEKIADCKAGIVPVQYRRVPCKRQGGIRFTITGNPYFNLVKVSNVGGSGDVVGVQVKGEGQLKWTELKRNWGQRWETNAMLSGETLTFRVTTSDGRSTLSKAVAPKGWQFGQTFVGKNLA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04903 285 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 281 IPR007117 -
Trre16g04903 285 SUPERFAMILY PHL pollen allergen 188 280 IPR036749 -
Trre16g04903 285 PANTHER EXPANSIN-A15 15 283 IPR002963 GO:0009664
Trre16g04903 285 Gene3D - 45 187 IPR036908 -
Trre16g04903 285 SMART dpbb_1 94 181 IPR007112 -
Trre16g04903 285 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 77 191 IPR007112 -
Trre16g04903 285 PRINTS Expansin/Lol pI family signature 98 116 IPR007118 GO:0005576
Trre16g04903 285 PRINTS Expansin/Lol pI family signature 60 75 IPR007118 GO:0005576
Trre16g04903 285 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576
Trre16g04903 285 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Trre16g04903 285 PRINTS Expansin/Lol pI family signature 267 281 IPR007118 GO:0005576
Trre16g04903 285 PRINTS Expansin signature 130 140 IPR002963 GO:0009664
Trre16g04903 285 PRINTS Expansin signature 149 166 IPR002963 GO:0009664
Trre16g04903 285 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Trre16g04903 285 PRINTS Expansin signature 190 202 IPR002963 GO:0009664
Trre16g04903 285 PRINTS Expansin signature 116 127 IPR002963 GO:0009664
Trre16g04903 285 PRINTS Expansin signature 89 103 IPR002963 GO:0009664
Trre16g04903 285 PRINTS Expansin signature 238 259 IPR002963 GO:0009664
Trre16g04903 285 PRINTS Expansin signature 267 283 IPR002963 GO:0009664
Trre16g04903 285 PRINTS Expansin signature 166 179 IPR002963 GO:0009664
Trre16g04903 285 Pfam Expansin C-terminal domain 192 270 IPR007117 -
Trre16g04903 285 Gene3D - 191 284 IPR036749 -
Trre16g04903 285 Pfam Lytic transglycolase 94 181 IPR009009 -
Trre16g04903 285 CDD DPBB_EXPA_N 60 186 - -
Trre16g04903 285 SUPERFAMILY Barwin-like endoglucanases 57 209 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04903 Trre-Chr16 52890117 52892034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04903 54 284 Expansin Gene Family AT3G55500 60.515 1.61e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04903 - - gmx:100800424 426.017