Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04897 ATGTCTTCCGAACAGCTTAGGATGTCTATGTCTGCCACGCAAAATCCTAAAGCAGGGACTATTGGAAATCTACTAATTAGCTCTGAATTAAGAACAAGACTGAGTGCTGTTCTTGTGAATTCAGTTACGTGCATAGAAGGATTGGAAGGATTAGAAGTGAAGGGCGTTGTATCAACTGGTCTTTATAGTGCAATGTCTTTGGTGGACAAGAATCTTCTTGCTCAAGTAATTCCAGTCCCCCGCGATCAACTCGACATCGACAACCGTGGATTTCCATCTTGGATTAATCAGGAGGACAAGAAAATGTTGAGGGGAAATAGAGTGACTCCTGATGTTGTTGTGGCGACTGATGGAAGTGGACATTACCGTGTTTATGCCGAATATGTGGAAATTCATCCGAAGAAACAGAATATTATGATCATTGGTGACGGAATCGATTCTACCGTTATCACAGGCAATCGGAATAAGATTGATGGTTGGAGTACATTCCGATCAGCCACCTTTGCCGTAGACGGTGCAAGATTTATTGCATGCAATATTTCATTTAAAAACACGGCTGGCCCTGTAAAGCACCAAGCAGTGGCATTGAGATCAAGTTCACATCATTCCATTTTTTTTCGGTGCGGCATATTTGGCTATCAAGATAGCCTGTATGCATTTTCAATGATCCGATTTTATAAGGAGTGCACCATTGCCGGAACAATAGACTTCATTTGTGGAGATGCCACGGCCGTATTCCAAGACTGCAGAATATTGGCCAAAAAAGGTCTCCCGAAACAACAGAATGTTGTAACAGCGCAGTCAAGAACAAATCCAAAAGAACTGAGTGGATTTTCCTTCCAATTTTGCAAAATTCTAGCGGACGCAGACCTTCTACCATATGTTGGAACCATCCCAACTTACTTGGGTAGACCATGGAAAGCTTATTCACGCACAATATTTATGGAGTCTTACTTGAGTAAGGTGGTAAGTCCAGCTGGTTGGATGAAATGGGAAGATACAGAATTTGCTCTCAATACATTGACTTATGGAGAGTACAAGAATTATGGGCCGGGTGCTAAGCTAGCTAACCGGGTGAAATGGAGAGGCTACCGTGTATTGAAAGAGATGGAGGCTAAAAGGTTTACCGTTGCTGAATTTATTGACGGGAATATTTGGTTACCATCCACCGGTGTTAATTATACAAGTGGTCTATAA 1197 0.4211 MSSEQLRMSMSATQNPKAGTIGNLLISSELRTRLSAVLVNSVTCIEGLEGLEVKGVVSTGLYSAMSLVDKNLLAQVIPVPRDQLDIDNRGFPSWINQEDKKMLRGNRVTPDVVVATDGSGHYRVYAEYVEIHPKKQNIMIIGDGIDSTVITGNRNKIDGWSTFRSATFAVDGARFIACNISFKNTAGPVKHQAVALRSSSHHSIFFRCGIFGYQDSLYAFSMIRFYKECTIAGTIDFICGDATAVFQDCRILAKKGLPKQQNVVTAQSRTNPKELSGFSFQFCKILADADLLPYVGTIPTYLGRPWKAYSRTIFMESYLSKVVSPAGWMKWEDTEFALNTLTYGEYKNYGPGAKLANRVKWRGYRVLKEMEAKRFTVAEFIDGNIWLPSTGVNYTSGL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04897 398 PANTHER PECTINESTERASE 3 388 - -
Trre16g04897 398 Gene3D - 109 398 IPR012334 -
Trre16g04897 398 Pfam Pectinesterase 124 384 IPR000070 GO:0030599|GO:0042545
Trre16g04897 398 FunFam Pectinesterase 4 121 398 - -
Trre16g04897 398 SUPERFAMILY Pectin lyase-like 108 397 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04897 Trre-Chr16 52859512 52861607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04897 2 398 Carbohydrate Esterase AT3G43270 48.970 2.28e-140 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04897 K01051 - gmx:100814987 457.218