Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04896 ATGGCTCTCTTTCATTCAATGATGTTCATGTTGTTCATGATCCTAGTCTCACCATCACAATCATCATCATTTCTAAGAGTTCCTCCTAACAAATTTGTGGACTCTGCCAAAGAAGTGAGCACAATTTTACAACAACTACATTCCATTTTATCACCACTCACCAACACTTCGGGACTACCAAACGACATTCATGATTGCCTCGATTTACTCGACATGTCTTCCGAACAGCTTAGGATGTCTATGTCTGCCACGCAAAATCCTAAAGCAGGGACTATTGGAAATCTACTAATTAGCTCTGAATTAAGAACAAGACTGAGTGCTGTTCTTGTGAATTCAGTTACGTGCATAGAAGGATTGGAAGGATTAGAAGTGAAGGGCGTTGTATCAACTGGTCTTTATAGTGCAATGTCTTTGGTGGACAAGAATCTTCTTGCTCAAGTAATTCCAGTCCCCCGCGATCAACTCGACATCGACAACCGTGGATTTCCATCTTGGATTAATCAGGAGGACAAGAAAATGTTGAGGGGAAATAGAGTGACTCCTGATGTTGTTGTGGCGACTGATGGAAGTGGACATTACCGTAATGTGATGGAGGCCGTATTGGCGGCACCGGATTACAGCAACAAAAAAAAAATATGCAATCGGAATAAGATTGATGGTTGGAGTACATTCCGATCAGCCACCTTTGCCGTAGACGGTGCAAGATTTATTGCATGCAATATTTCATTTAAAAACACGGCTGGCCCTGTAAAGCACCAAGCAGTGGCATTGAGATCAAGTTCACATCATTCCATTTTTTTTCGGTGCGGCATATTTGGCTATCAAGATAGCCTGTATGCATTTTCAATGATCCGATTTTATAAGGAGTGCACCATTGCCGGAACAATAGACTTCATTTGTGGAGATGCCACGGCCGTATTCCAAGACTGCAGAATATTGGCCAAAAAAGGTCTCCCGAAACAACAGAATGTTGTAACAGCGCAGTCAAGAACAAATCCAAAAGAACTGAGTGGATTTTCCTTCCAATTTTGCAAAATTCTAGCGGACGCAGACCTTCTACCATATGTTGGAACCATCCCAACTTACTTGGGTAGACCATGGAAAGCTTATTCACGCACAATATTTATGGAGTCTTACTTGAGTAAGGTGGTAAGTCCAGCTGGTTGGATGAAATGGGAAGATACAGAATTTGCTCTCAATACATTGACTTATGGAGAGTACAAGAATTATGGGCCGGGTGCTAAGCTAGCTAACCGGGTGAAATGGAGAGGCTACCGTGTATTGAAAGAGATGGAGGCTAAAAGGTTTACCGTTGCTGAATTTATTGACGGGAATATTTGGTTACCATCCACCGGTGTTAATTATACAAGTGGTCTATAA 1380 0.4196 MALFHSMMFMLFMILVSPSQSSSFLRVPPNKFVDSAKEVSTILQQLHSILSPLTNTSGLPNDIHDCLDLLDMSSEQLRMSMSATQNPKAGTIGNLLISSELRTRLSAVLVNSVTCIEGLEGLEVKGVVSTGLYSAMSLVDKNLLAQVIPVPRDQLDIDNRGFPSWINQEDKKMLRGNRVTPDVVVATDGSGHYRNVMEAVLAAPDYSNKKKICNRNKIDGWSTFRSATFAVDGARFIACNISFKNTAGPVKHQAVALRSSSHHSIFFRCGIFGYQDSLYAFSMIRFYKECTIAGTIDFICGDATAVFQDCRILAKKGLPKQQNVVTAQSRTNPKELSGFSFQFCKILADADLLPYVGTIPTYLGRPWKAYSRTIFMESYLSKVVSPAGWMKWEDTEFALNTLTYGEYKNYGPGAKLANRVKWRGYRVLKEMEAKRFTVAEFIDGNIWLPSTGVNYTSGL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04896 459 SUPERFAMILY Pectin lyase-like 179 458 IPR011050 -
Trre16g04896 459 CDD PMEI-like_4 4 151 - -
Trre16g04896 459 Pfam Plant invertase/pectin methylesterase inhibitor 24 138 IPR006501 GO:0004857
Trre16g04896 459 FunFam Pectinesterase 4 211 459 - -
Trre16g04896 459 Pfam Pectinesterase 209 445 IPR000070 GO:0030599|GO:0042545
Trre16g04896 459 Gene3D - 208 459 IPR012334 -
Trre16g04896 459 Gene3D Invertase/pectin methylesterase inhibitor family protein 18 145 IPR035513 -
Trre16g04896 459 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 136 IPR035513 -
Trre16g04896 459 PANTHER PECTINESTERASE 47 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04896 Trre-Chr16 52859299 52861607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04896 1 459 Carbohydrate Esterase AT3G43270 44.213 1.26e-145 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04896 K01051 - gmx:100814987 476.863