Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04890 ATGAGCCAAACAAACAAGAGCTTTTGGGGGATGAAGCTGCTATGTTTGTTTGGGTTCATAGGCTTTGTGATTGTGAAAGGGGTGGATGTTTTAGAGAATGCTAATGTGACAGACATGCAATATGTCAGTGGAAGAGGTTTCAACTATAGACCTTTAATGGTTGGTCTTACTCTTATCAGTGGAGCTGCTGCTAAAGGAGCTGTCTGCCTAGATGGATCTTTACCGGCTTACCACTTCCACCGCGGATACGGTTCCGGATCAAACAGTTGGCTAGTACATTTGGAGGGAGGAGGCTGGTGTGGAACTATCAGAAATTGTATTTATAGTAAGAAAACGCGTCATGGTTCATCGTATTTTATGGAAAAACAAATACCATTTATTGGAATATTGAGCAACAAAGCTGAGGAAAATCCAGACTTTTTCAATTGGAATAGAGTAAAAATTCGTTATTGTGATGGCGCATCATTTAGCGGAGACAGTCAAAATGCGAAAGCAGGGTTGTATTTCAGAGGGCAACGCATATGGCAAGCTGCTATGGAAGATTTAATGTCGAAAGGGATGCGTTATGCCAAACAGGCTCTTCTATCTGGATGTTCCGCAGGAGGATTATCAGCTATACTACATTGCGATGAATTTCGGGAATTGTTTTCTAGAAATACTAGAGTAAAGTGCTTTAGTGATGCTGGATTATTCCTTGACTCTATTGATGTATCTGGCCGTCGCAGTTTAAGGAATTTTTTCGGAAGTGTAGTCACCTTACAGGGTGTGCAGAAGAGCCTTCCAAGGAGTTGTACCAATCACCTCAATCCAATTTTGTGCTTTTTCCCTCAGCGTTTAATTGCCAATGTTAGGACACCGCTATTTCTTCTAAATGCAGCTTATGATACTTGGCAGATTCAAGCCAGTCTAGCGCCACCATCTGCTGACTATCGTTGGAATTGGTATGAATGCAGAAAAAATTATGCACGTTGCAGTTCACCACAGATACAATATCTGCAAGGTTTTCGAAATCAGATGCTTAGAGTTACAAGACGCTTCTCAAAGTCGCGCCAAAACGGATTATTCATTAATTCATGTTTCGCTCACTGTCAATCTGAAAGACAGGATACATGGTTTGGCCGCGGTTCTCCTCACATTGGAAATAAAGGTATCGCAGATTCCGTTGGGAACTGGTTTTTTGACCGAGTTGGTGTCCAAGCTATTGGGTGTGCTTACCCTTGTGACAAAACCTGTCATAATTTGGTTTTCGGCTAA 1254 0.4187 MSQTNKSFWGMKLLCLFGFIGFVIVKGVDVLENANVTDMQYVSGRGFNYRPLMVGLTLISGAAAKGAVCLDGSLPAYHFHRGYGSGSNSWLVHLEGGGWCGTIRNCIYSKKTRHGSSYFMEKQIPFIGILSNKAEENPDFFNWNRVKIRYCDGASFSGDSQNAKAGLYFRGQRIWQAAMEDLMSKGMRYAKQALLSGCSAGGLSAILHCDEFRELFSRNTRVKCFSDAGLFLDSIDVSGRRSLRNFFGSVVTLQGVQKSLPRSCTNHLNPILCFFPQRLIANVRTPLFLLNAAYDTWQIQASLAPPSADYRWNWYECRKNYARCSSPQIQYLQGFRNQMLRVTRRFSKSRQNGLFINSCFAHCQSERQDTWFGRGSPHIGNKGIADSVGNWFFDRVGVQAIGCAYPCDKTCHNLVFG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04890 417 Pfam Pectinacetylesterase 51 395 IPR004963 GO:0016787
Trre16g04890 417 PANTHER NOTUM-RELATED 40 413 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04890 Trre-Chr16 52786070 52789365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04890 53 416 Carbohydrate Esterase AT1G57590 69.231 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04890 K19882 - gmx:100791571 752.666