Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04889 ATGGAAAAATTAGAACAAATTGATGCTCATCAAACTCAATCTTCTTCATCTTCATCTTCTTCAATAGATAGTAACAACTACAGCAACTGTTGCAGAAACAGAACTGATTTAAGCACTGACCTCAAACTTGGTCTTAGCATCTCTCCTTCTTCTCAATCTCAATTACCATTCAATTCAACAACATCAAGAGAAGAAACATTTGATTGGCCACCAGTTAATAAGTCAGTATTGAGAAGGAACAAACAAATTGATATTCATGATCAAAGATCTTCTTTATTTGTCAAAGTTTATATGGAAGGAATCCCAATTGGTAGAAAATTAAATCTGCTTGAACATGATAGCTATGATGGACTTGTTAAAGCTCTTTGTCATATGTTTAGGACAATGATTCTCTCTCCTAACTCTCAACCACTTAATTCTTGGAATTTTCATGTGCTAACTTATGAGGATCAAGAAGGAGATTGGATGATGGTTGGAGATGTGCCTTGGGAGATGTTTTTGTCAAGTGTGAAGAGGCTGAAGATCACAAGAGCTAACAGCTGCTAG 546 0.3553 MEKLEQIDAHQTQSSSSSSSSIDSNNYSNCCRNRTDLSTDLKLGLSISPSSQSQLPFNSTTSREETFDWPPVNKSVLRRNKQIDIHDQRSSLFVKVYMEGIPIGRKLNLLEHDSYDGLVKALCHMFRTMILSPNSQPLNSWNFHVLTYEDQEGDWMMVGDVPWEMFLSSVKRLKITRANSC 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04889 181 SUPERFAMILY CAD & PB1 domains 89 175 - -
Trre16g04889 181 MobiDBLite consensus disorder prediction 1 27 - -
Trre16g04889 181 ProSiteProfiles PB1 domain profile. 91 180 IPR000270 GO:0005515
Trre16g04889 181 Pfam AUX/IAA family 62 178 IPR033389 -
Trre16g04889 181 Gene3D - 86 181 - -
Trre16g04889 181 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 37 179 IPR003311 GO:0005634|GO:0006355
Trre16g04889 181 MobiDBLite consensus disorder prediction 8 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04889 Trre-Chr16 52760286 52761313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04889 94 175 B3 DNA Binding Superfamily AT2G46530 37.805 1.54e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre16g04889 AUX_IAA 2.5e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04889 K14484 - gmx:100818083 251.906