Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04884 ATGGAAGGCAAAGTTGCACTTCAAAAATTGCTACAAGTTCAGGAAATGCTATATGATAACAATACACATGCTTCCATTAAAAATACTGTAGGAATTGGATCTAGTTGTCTAAGTTTGAGTCTGAATAATGACTTAGAAGAGATCACTCCACAAAATCAAGAACATCCTATCCCCCAACTCAAATTGGGGTGGCTGGAAAGTAAGGTGGAGGAGGTGAAGAAAGAAAATCAGATTTTAAGATGTATGTTAAATCAAGTAACTCAACAATATACACTTCTTCAAACTCAATTCTTAATAGCCATGCAGCAGCAACAACAATTATCTACATCACCTAATAAAATCAATAAAGAAGAAGCTGAAATATTAAAAGAGGAGGATGAAGCATCTGAATTAGCTTCTTCTTGTAGAAAAAAAGCTAGAGTGTCCATTAGGGCACGGTCAGATTTCTCATTGATGAGTGATGGGTGTAGATGGAGAAAGTATGGACAAAAGATATCAAAGGCTAATCCATACTGTCCCCGGGCCTATTACCGTTGCAATATGGGATTGGGAACAACAACACCATGTCCCGTTCGTAAGCAGGTTCAAAGGTGTTCTATAGATGAGACTATATTCATCACAACCTATGAGGGGAATCATAATCATTCACTTCCACCATCAGCAAGGTTAATGGCAAATACAACATCAGCAGCATTGAGCATGTTTCTTTCAGGTTCAAGTTCAACCACTAGTTTACATGGCAGCAACAATACTTTATCAAATTCAAGCCTCTTCTCTTCCTCTGCCTCCACTGGCTTAACCACTTTCTATTCATCAGCATCATCATGTCCTACTATAACATTAGACTTAACTCAACCCTCTACTAACTTCTTCAAATTTCAAACACCTATTTCTTCAAACCACTACAATTACCAACCCTTTCCTCAACAATCTAATGAGGGATTAAGTTTGTCTTCTAAGATTTCAACCATGATACCCTCAGAGAAAAATCTTTCCTTGATGGATGGTGTGATTGCAGCTATAGTCAAAGATCCTTCTATTAAGGCAGCATTAGATGCAGCTGTTTCTTCACTCTCTCCTGGAGTAGTATTGCAACAGTGA 1101 0.3787 MEGKVALQKLLQVQEMLYDNNTHASIKNTVGIGSSCLSLSLNNDLEEITPQNQEHPIPQLKLGWLESKVEEVKKENQILRCMLNQVTQQYTLLQTQFLIAMQQQQQLSTSPNKINKEEAEILKEEDEASELASSCRKKARVSIRARSDFSLMSDGCRWRKYGQKISKANPYCPRAYYRCNMGLGTTTPCPVRKQVQRCSIDETIFITTYEGNHNHSLPPSARLMANTTSAALSMFLSGSSSTTSLHGSNNTLSNSSLFSSSASTGLTTFYSSASSCPTITLDLTQPSTNFFKFQTPISSNHYNYQPFPQQSNEGLSLSSKISTMIPSEKNLSLMDGVIAAIVKDPSIKAALDAAVSSLSPGVVLQQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04884 366 Coils Coil 69 89 - -
Trre16g04884 366 ProSiteProfiles WRKY domain profile. 147 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g04884 366 Gene3D WRKY domain 137 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g04884 366 SMART WRKY_cls 152 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g04884 366 Pfam WRKY DNA -binding domain 154 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g04884 366 Coils Coil 114 134 - -
Trre16g04884 366 SUPERFAMILY WRKY DNA-binding domain 145 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g04884 366 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 51 358 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04884 Trre-Chr16 52714406 52716855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04884 111 285 WRKY Transcription Factor Family AT4G04450 53.476 7.37e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g04884 WRKY 8.5e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04884 - - psat:127138760 386.726