Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04881 ATGGGGGATGAGGTAGTGTTGTTGGGTTATCATCTCAGTATGTTTGACATAAGAGTTAGGATTGCATTGGCAGAAAAAGGTGTCAAGTATGAGTACAAGGAAGAGGATCTTGTCAACACCAAGAGTGCACTGCTTCTGCAAATGAATCCAGTTCACAAGAAAATCCCAGTCCTTATTCATAATGGGAAGCCTATTTGTGAATCCATCATTATTGTTGAGTACATTGATGAGGTCTGGAAGGATCAAACTCCATTGTTGCCCACTGATCCATATCAGAGAGCTCAAGCCAGATTCTGGGCTGATTTTTTTGATAACAAGGTGCATGAAGTTGCAAAGAAGATATGGACTGGAAAGGTGGGTGAACATGAGAAAGAAAAGAAAGAGTTAGAAGAGAATTTGAAGACATTGGAGGAGGTTCTTGGGAACAATCCATATTTTGGGGGTGACACATTTGGGTTTCTTGACATTGCTTTCATTCCTTTTTATAAGTGGTTTTCTACTTATGAGGCAGTAGGCAAAATGAAGTTAGACTGCCCAAAACTCATTGCATGGGGAAAGAGATGTTTGGAGAGAGAAAGTGTGTCCAAATTCGTCTCTGATGAAAAGGATGTCTATGAGTTTGTTATGATGTACAGGAAGAAAATTGGGGTGGAATAA 657 0.3988 MGDEVVLLGYHLSMFDIRVRIALAEKGVKYEYKEEDLVNTKSALLLQMNPVHKKIPVLIHNGKPICESIIIVEYIDEVWKDQTPLLPTDPYQRAQARFWADFFDNKVHEVAKKIWTGKVGEHEKEKKELEENLKTLEEVLGNNPYFGGDTFGFLDIAFIPFYKWFSTYEAVGKMKLDCPKLIAWGKRCLERESVSKFVSDEKDVYEFVMMYRKKIGVE 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04881 218 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 207 IPR010987 -
Trre16g04881 218 Gene3D Glutaredoxin 1 88 - -
Trre16g04881 218 Coils Coil 112 139 - -
Trre16g04881 218 FunFam Glutathione S-transferase U20 89 218 - -
Trre16g04881 218 Pfam Glutathione S-transferase, C-terminal domain 121 192 IPR004046 -
Trre16g04881 218 CDD GST_C_Tau 90 209 IPR045074 GO:0004364|GO:0006749
Trre16g04881 218 Pfam Glutathione S-transferase, N-terminal domain 9 77 IPR004045 -
Trre16g04881 218 SFLD Glutathione Transferase (cytosolic) 3 216 IPR040079 -
Trre16g04881 218 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
Trre16g04881 218 Gene3D - 89 218 - -
Trre16g04881 218 FunFam Tau class glutathione S-transferase 1 88 - -
Trre16g04881 218 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Trre16g04881 218 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
Trre16g04881 218 CDD GST_N_Tau 5 79 - -
Trre16g04881 218 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 205 IPR045073 -
Trre16g04881 218 SFLD Main.3: Omega- and Tau-like 3 216 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04881 Trre-Chr16 52699282 52700408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04881 1 218 Glutathione S-transferase Gene Family AT1G17180 61.364 2.90e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04881 K00799 - gmx:100781460 344.739