Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04879 ATGGAACCAGAAGACTGGGATTTGAGCGGCGAAGACCTTGATTCTCTTGAAAGAGACGCTTATCAGAAGATTGCTCAACTCCGCTCCAACCCTCCTCCTTCTTCTTCTTCTTCCTCTTCTCATTCTCCAAACCCTCTTCCTCCATCTTCTTCTTCTTCTTCTGCAAATCCCCCTTCATTGCCTCAAGGTGCTAGAGCACTCCCCCCTTCATTCAAATCAGGAGGAACTAACAACATTAACAATAACAATGATGAGAATTCTAAAGAATTGACAAAAGTTTCCGTCAAATTTCTTCTCCATTCCAGTGGACATATTGCAGCTAAGTTTCAATATGATCAGGTAATAGTTGCTGCTTTTAGAAGAATCCCCAAATCTTCTTGGAATGCCAAAGAACGGTTATGGATGTTCCCTTTATCTTCTTTGTCGGAAGCAGAAAAGGTTCTTAGAGAAATATCTGGTTATAATGTTCAGGTGGAGAACTTAGATCCCTTAGTGCAACGTGCTATCACTGCTTCCACTTCTGCTCCTGATCTTCGAGATCGATATGATAAGATCCCTAGCTATGTTGAATCAAAGCTTTTGCCATTTCAACGAGACGGTATAAGGTTTATATTGCAGCATGGATGCCGTGCTTTTTTAGCGGATGAAATGGGACTGGGGAAAACATTGCAGGCCATTGCTGTAGCTTCATGCGTTCAGGATTCGTGGCCCGTTCTTATTCTAGCACCATCTGCATTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGTATATTCCTTCATCAGATATACTTGTTGTCTTATCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAACATAGTCTCTTCAAGTACCAAAAACAGCATTCATCTGGATGGACTATTCAACATTATCTCATATGATTTGGTGCCAAAGATGCAAAATGCGCTTATGGCGTCTGATTTTAAGGTTGTAATTGCTGATGAGTCACACTTTCTGAAAAATGCCCAGGCAAAGAGGACAACTGCTTCTCTTCCGATTATAAAGAAAGCTAAATATGCAATATTGCTTAGTGGAACTCCTGCTTTATCTCGACCAATCGAACTATTCAAACAGCTGGAAGCTTTGTATCCTGATGTGTATAAGAATGTTCATGAATATGGTAACCGGTATTGCAAGGGTGGAGTTTTTGGACTTTATCAAGGGGCAAGTAATCATGAAGAATTGCACAATTTGATGAAGGCAACATCGATGATTAGGAGGCTTAAAAAGGATGTTCTTTCTGAACTTCCTGTAAAGCGTAGGCAACAAGTTTTTCTAGACTTGGCCGATAAGGACATGAAGCAAATTAATGCTCTATTTCGCGAGTTGGAGAGGGTAAAAGCCAAAATTAAGGCTTCTAAATCACAAGAGGAGGCTGAATCACTCAAGTTTGCTCAAAAGAATCTCATTAACAAGATTTATACTGATTCTGCGGAAGCCAAGATTCCTGCTGTTCTTGATTATGTTGGAACTGTAATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCTACCAATGATTGATGCGATACACGAGTTTCTTCTTAAAAAAAAGGTTGGATGCATCCGGATTGATGGAGGCACACCTTCTGGATCAAGGCAACAATTAGTTACAGAGTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCCATCAAAGCTGGAGGTGTCGGGTTAACGTTGACTGCTGCCAGCACAGTCATCTTTGCAGAATTGTCTTGGACTCCTGGTGATCTAATTCAGGCCGAAGACCGTGTTCATAGAATTGGCCAGGTTTCTTCAGTAAATATATACTACTTGCTTGCAAATGACACAGTTGATGATATCATATGGGACGTAGTGCAAAGCAAACTGGACAATTTGGGGCAGATGCTTGATGGCCATGAGAACACCTTAAAGGTCTCAGATGATCAGCCACCATTGAGTAGCCCTGCAAAGCAGAAAACACTTGACCAATTTGTCAGAAGATGTGACAACAATAGTAGTGGATTGGAACATCAGTCAACCCCCAAACGTCCTCGGCACTGA 2064 0.4138 MEPEDWDLSGEDLDSLERDAYQKIAQLRSNPPPSSSSSSSHSPNPLPPSSSSSSANPPSLPQGARALPPSFKSGGTNNINNNNDENSKELTKVSVKFLLHSSGHIAAKFQYDQVIVAAFRRIPKSSWNAKERLWMFPLSSLSEAEKVLREISGYNVQVENLDPLVQRAITASTSAPDLRDRYDKIPSYVESKLLPFQRDGIRFILQHGCRAFLADEMGLGKTLQAIAVASCVQDSWPVLILAPSALRLQWASMIQQWLYIPSSDILVVLSQSGGSNRGGFNIVSSSTKNSIHLDGLFNIISYDLVPKMQNALMASDFKVVIADESHFLKNAQAKRTTASLPIIKKAKYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGLYQGASNHEELHNLMKATSMIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFRELERVKAKIKASKSQEEAESLKFAQKNLINKIYTDSAEAKIPAVLDYVGTVIEAGCKFLIFAHHLPMIDAIHEFLLKKKVGCIRIDGGTPSGSRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLDNLGQMLDGHENTLKVSDDQPPLSSPAKQKTLDQFVRRCDNNSSGLEHQSTPKRPRH 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04879 687 FunFam Chromatin remodeling factor18 166 440 - -
Trre16g04879 687 CDD SF2_C_SNF 489 613 - -
Trre16g04879 687 MobiDBLite consensus disorder prediction 71 86 - -
Trre16g04879 687 Gene3D - 164 441 IPR038718 -
Trre16g04879 687 ProSiteProfiles HARP domain profile. 86 163 IPR010003 -
Trre16g04879 687 MobiDBLite consensus disorder prediction 1 86 - -
Trre16g04879 687 FunFam Chromatin remodeling factor18 451 682 - -
Trre16g04879 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 410 IPR027417 -
Trre16g04879 687 SMART ultradead3 189 382 IPR014001 -
Trre16g04879 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 647 IPR027417 -
Trre16g04879 687 Gene3D - 452 679 IPR027417 -
Trre16g04879 687 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 674 - -
Trre16g04879 687 CDD DEXHc_HARP_SMARCAL1 193 416 - -
Trre16g04879 687 Pfam SNF2-related domain 207 471 IPR000330 GO:0005524|GO:0140658
Trre16g04879 687 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 494 645 IPR001650 -
Trre16g04879 687 SMART helicmild6 519 602 IPR001650 -
Trre16g04879 687 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 374 IPR014001 -
Trre16g04879 687 Coils Coil 435 469 - -
Trre16g04879 687 Pfam Helicase conserved C-terminal domain 501 602 IPR001650 -
Trre16g04879 687 MobiDBLite consensus disorder prediction 27 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04879 Trre-Chr16 52685470 52693812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04879 460 622 RAD5 or RAD16-like Gene Family AT1G05120 30.952 5.23e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre16g04879 SNF2_N 1.3e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04879 K14440 - gmx:100797654 1090.1