Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04873 ATGTTGGCTAAGACTAGTTTGGATGAAGATATAGCCTCAACTGAGATGACAGGGTCAGCAAGTCATCATCCACCAATTCCTGCAGGTTCTGATAATTTCCAAGAAATGGTTGACATGCACCAAGATACCAAGAAGAACAAGGTGAAGGATCAAAGCAATAAAACAGTACCCTTTTACAAGCTTTTCTCATTTGCAGACTCTTGGGATTATTTGTTGATGATTGCTGGGACTACAAGTGCTGTAGGGAATGGAGTCTCTATGCCTTTAATGGCTATAATTATTGGGGACACTCTTGATGCTTTTGGAGAAAATGTAAACACTAAACAAGTAGTTCATCAAGTTTCCAAGGTCTCTCTCAAGTTTGCAATTTTAGGTGCATGTGCTTTTTTTGCAGTGTTTCTACGAGAGAGACAAGCTGCAAGGATAAGGGCTTTTTACCTCAAAGCAGTTTTAAGGCAAGATATCAGTTTCTTTGACAAGGAAACAAACAGTGGTGAAGTTGTTGGAAGAATGTCAGGTGATACAGTTTTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTGTGTGTCATGTTTATTAGGAGGTTTAGTTGTGGCATTCATCAAGGGTTGGCTTCTAGCCCTTGTCCTTCTATCGTCTATCCCTCTTCTTCTCCTCTCTGGTTCAATAATGAGCTTTGTATTCGCAATGATGGCGTCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAACTATAGTAGAGCGGATAATCGGTTCTATTAGAACAGTTGCATCATTTACCGGCGAAAAGCAAGCTATAGCTCAGTACAATCAATCCTTAACTAAAGCTTATAAAATTGGAGTGCAAGAAGGATTGGCTATTGGTTTAGGATTCGGTTCGGCTCGTTTATTAGTTTATTTCACTTATGCTTTGACCGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGTTATACAGGAGGTGAAGTCATAAGTGTATTTTTTGCAATTCTAACAGGTTCCTTGTCTCTAGGACAGGCATCTCCATGTTTAACTGCATTTGCAGCTGGACAAGCTGCAGCCTTTAATATGTTTGAAACAATTAAAAGGAGGCCAGAAATTGATGCTTATGATACTACTGGGAGAAAGCTTGATGACATCCGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAAATGAATTGATATTCAATGCATTTTCTATTTCAATATCAAGTGGCACTACTGCGGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCTACGGTTATTAGTTTGATAGAGAGATTTTATGATCCACAAGGTGGTGAAATCCTCATTGACAGTATCAACCTTAGAGAATTTCAACTGAAATGGATCAGACAGAAAATTGGCCTAGTCAGTCAAGAACCAGTTCTCTTTGCTTGTAGCATTAAAGAGAACATTGGCTATGGTAAGGGTGCGGCAACCGATGAAGAAATCAGATATGCAGCAGAACTTGCTAATGCTGCTAACTTCATTGATAAATTTCCCCATGGACTTGAAACGATGGTCGGAGAGCATGGAGCTCAGCTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTTTACTACTCGATGAAGCAACAAGTGCTCTTGACATGGAATCGGAAAGGGTGGTACAAGAAACACTAGACAGAATCATGATAAACCGAACAACCATCATCGTAGCTCACCGCCTAAGCACAATAAGGAATGCTGATATCATTGCCGTTGTTCACCAAGGAAAAGTAGTAGAAAAAGGTACACATGCTGAGCTCACTAAAGATCCTGATGGAGCTTATAGTCAACTCATTAGGCTGCAAGAAATTAACAAGGATTCATCAGAACAATATGATGCTAATGACTCAGATAAGCTAGAAAACATTGTAGATTCTGGAAGAGAGTCAAGCCAAAGGTCTCTAAGCCGTGAATCATCTGCAACCGGAAACAGCAGTGACAACTCCTTCAAAGCATCAAATTTTATTCCTACCACATTTGTACGAGGATCTGAATTTTCTCCTTCAGAAGAAGCAGCATCACTTAATAGTAAAACTCAAGATGTTCCGTTTCTCCGCCTCGCTTATCTTAACAAGCCTGAAATCCCCATTTTACTCATAGGGACTCTAGCAGCAGCAGTTACTGGAGCAATGCTGCCTATTCTAGGACTTCTACTCTCCAAGATGATAAATACATTCTTTGAGCCTGCAGACAAACTTCGTAAAGACTCAAAGTTTTGGGCATTAATATTTATTTCCTTTGGTGTGGCTTCCTTTGCTTTCCATCCATTAAGGTCCTACTTTTTTGCAGTAGCTGGTTCGAAGTTGATAAAAAGGATCCGGTTAATGTGTTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATAAAGCTGAGAATTCAAGTGGTGCGCTTGGAGCAAGGCTGTCAACTGATGCTGCTTCAATTCGAACTTTGGTTGGCGATGCACTCGGTTTGCTTGTTCAAGATATTGCTACAGTTATGACAGCCTTGGTAATCTCCTTTGAAGCAAATTGGCAGCTTTCTCTCATCATTATTGTTTTGGTACCTCTAATATTAGTAAATGGACATTTTCAAATCAAGTCCATGCAAGGATTCAACACAGATGCAAAGAAATTATATGAGGAAGCAAGCCAAGTAGCGAACGATGCGGTAGGGAATATCAGAACAGTTTCTGCTTTCTGTGCCGAAGAGAAGGTGATGGAATTATACCAGAAGAAATGTGTAGTACCAGTCCAGACAGGAAAAAGGCAGGGTTTAGTCAGTGGAATTGGTTTTGGCATATCAATCTTCTTTCTGTTTTGTGTCTATGCATGCAGTTTTTACGCCGGCGCACAACTTGTTGAGCATGGCAAAACAACAATATCAGAAGTTTTTCAAGTATTTTTCTCTCTCAATATGGCAGCCGTTGCAATATCTCAGTCCGGCTTCATGGCACCAGGAGCCAGTAAAGCAAAAAGTTCAGCTGCTTCTATATTTGCTATTCTTGATCAGAAATCAACAATAGACACCAGTGATGAATCAGGAATGACACTAGAAGATGTGAAAGGGGTGATAAAGTTTCACAATGTCACTTTCAAGTATCCAACTAGGCCTGATGTTCATATATTCAAAAATCTTTCATTAACCATTCATTCAGGACAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCTGATTCAGGTCAGATTAAACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAGCAAATGGGCCTGGTAAGCCAAGAGCCTGTGTTGTTCAATGACACCATCAGAGCCAACATTGCTTATGGAAAAGGTGGTAATGCAACTGAGACTGAAATTATAGCTGCGGCAGAACTGGCAAATGCTCATAAGTTCATTAGCAGTTTGCAGCAGGGGTATGATACAATAGTAGGGGAGAGAGGGACTCAACTATCCGGAGGACAGAAGCAACGCGTAGCAATTGCGAGAGCCATAGTTAACAGTCCAAGAATATTACTATTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAAGATGCACTTGATAGAGTGAGGGTGGACAGAACCACCATTGTGGTGGCTCATAGATTATCTACCATAAAGGGTGCAAATTCAATAGCAGTTGTTAAAAATGGAGTCATTGAAGAAAAAGGAAAGCATGACACATTGCTCAACAAGGGTGGTACCTATGCTTCTTTAGTAGCATTGCATACAAGTACCACTTCTTCATCTTATTAA 3873 0.4043 MLAKTSLDEDIASTEMTGSASHHPPIPAGSDNFQEMVDMHQDTKKNKVKDQSNKTVPFYKLFSFADSWDYLLMIAGTTSAVGNGVSMPLMAIIIGDTLDAFGENVNTKQVVHQVSKVSLKFAILGACAFFAVFLRERQAARIRAFYLKAVLRQDISFFDKETNSGEVVGRMSGDTVFIQEAMGEKVGKFIQCVSCLLGGLVVAFIKGWLLALVLLSSIPLLLLSGSIMSFVFAMMASRGQAAYSEAATIVERIIGSIRTVASFTGEKQAIAQYNQSLTKAYKIGVQEGLAIGLGFGSARLLVYFTYALTVWFGGKMVLEKGYTGGEVISVFFAILTGSLSLGQASPCLTAFAAGQAAAFNMFETIKRRPEIDAYDTTGRKLDDIRGDIELREVCFSYPTRPNELIFNAFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQGGEILIDSINLREFQLKWIRQKIGLVSQEPVLFACSIKENIGYGKGAATDEEIRYAAELANAANFIDKFPHGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDMESERVVQETLDRIMINRTTIIVAHRLSTIRNADIIAVVHQGKVVEKGTHAELTKDPDGAYSQLIRLQEINKDSSEQYDANDSDKLENIVDSGRESSQRSLSRESSATGNSSDNSFKASNFIPTTFVRGSEFSPSEEAASLNSKTQDVPFLRLAYLNKPEIPILLIGTLAAAVTGAMLPILGLLLSKMINTFFEPADKLRKDSKFWALIFISFGVASFAFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDIATVMTALVISFEANWQLSLIIIVLVPLILVNGHFQIKSMQGFNTDAKKLYEEASQVANDAVGNIRTVSAFCAEEKVMELYQKKCVVPVQTGKRQGLVSGIGFGISIFFLFCVYACSFYAGAQLVEHGKTTISEVFQVFFSLNMAAVAISQSGFMAPGASKAKSSAASIFAILDQKSTIDTSDESGMTLEDVKGVIKFHNVTFKYPTRPDVHIFKNLSLTIHSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATETEIIAAAELANAHKFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDTLLNKGGTYASLVALHTSTTSSSY 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04873 1290 CDD ABC_MTABC3_MDL1_MDL2 1044 1279 - -
Trre16g04873 1290 SMART AAA_5 1071 1265 IPR003593 GO:0016887
Trre16g04873 1290 SMART AAA_5 415 587 IPR003593 GO:0016887
Trre16g04873 1290 MobiDBLite consensus disorder prediction 651 674 - -
Trre16g04873 1290 FunFam Uncharacterized protein 1008 1034 - -
Trre16g04873 1290 CDD ABC_6TM_Pgp_ABCB1_D1_like 73 349 - -
Trre16g04873 1290 Gene3D - 378 627 IPR027417 -
Trre16g04873 1290 Gene3D - 1034 1283 IPR027417 -
Trre16g04873 1290 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 723 1009 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04873 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 626 IPR027417 -
Trre16g04873 1290 ProSitePatterns ABC transporters family signature. 1184 1198 IPR017871 GO:0005524|GO:0016887
Trre16g04873 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1033 1281 IPR027417 -
Trre16g04873 1290 CDD ABC_6TM_Pgp_ABCB1_D2_like 712 1027 - -
Trre16g04873 1290 FunFam ABC transporter B family member 1 1034 1283 - -
Trre16g04873 1290 Pfam ABC transporter 1063 1212 IPR003439 GO:0005524
Trre16g04873 1290 Gene3D ABC transporter type 1, transmembrane domain 60 636 IPR036640 GO:0005524|GO:0016020
Trre16g04873 1290 CDD ABC_MTABC3_MDL1_MDL2 388 626 - -
Trre16g04873 1290 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 74 353 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04873 1290 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 388 624 IPR003439 GO:0005524
Trre16g04873 1290 SUPERFAMILY ABC transporter transmembrane region 60 372 IPR036640 GO:0005524|GO:0016020
Trre16g04873 1290 SUPERFAMILY ABC transporter transmembrane region 710 1024 IPR036640 GO:0005524|GO:0016020
Trre16g04873 1290 Gene3D ABC transporter type 1, transmembrane domain 1011 1288 IPR036640 GO:0005524|GO:0016020
Trre16g04873 1290 MobiDBLite consensus disorder prediction 1 32 - -
Trre16g04873 1290 FunFam ABC transporter B family member 1 702 1007 - -
Trre16g04873 1290 MobiDBLite consensus disorder prediction 649 674 - -
Trre16g04873 1290 Pfam ABC transporter 407 555 IPR003439 GO:0005524
Trre16g04873 1290 FunFam ABC transporter B family member 1 378 627 - -
Trre16g04873 1290 ProSitePatterns ABC transporters family signature. 527 541 IPR017871 GO:0005524|GO:0016887
Trre16g04873 1290 Pfam ABC transporter transmembrane region 73 339 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04873 1290 Pfam ABC transporter transmembrane region 722 994 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04873 1290 Gene3D ABC transporter type 1, transmembrane domain 702 1010 IPR036640 GO:0005524|GO:0016020
Trre16g04873 1290 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1044 1281 IPR003439 GO:0005524
Trre16g04873 1290 PANTHER ABC TRANSPORTER B FAMILY 39 628 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04873 Trre-Chr16 52655285 52661070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04873 54 1285 Calmodulin-binding Proteins AT2G36910 42.274 0.0 978
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04873 K05658 - gmx:100777713 1936.77