Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04872 ATGTTGGCTAAGACTAGTTTGGATGAAGATATAGCCTCAACTGAGATGACAGGGTCAGCAAGTCATCATCCACCAATTCCTGCAGGTTCTGATAATTTCCAAGAAATGGTTGACATGCACCAAGATACCAAGAAGAACAAGGTGAAGGATCAAAGCAATAAAACAGTACCCTTTTACAAGCTTTTCTCATTTGCAGACTCTTGGGATTATTTGTTGATGATTGCTGGGACTACAAGTGCTGTAGGGAATGGAGTCTCTATGCCTTTAATGGCTATAATTATTGGGGACACTCTTGATGCTTTTGGAGAAAATGTAAACACTAAACAAGTAGTTCATCAAGTTTCCAAGGTCTCTCTCAAGTTTGCAATTTTAGGTGCATGTGCTTTTTTTGCAGTGTTTCTACAGGTGTCTTGCTGGATGGTCACAGGAGAGAGACAAGCTGCAAGGATAAGGGCTTTTTACCTCAAAGCAGTTTTAAGGCAAGATATCAGTTTCTTTGACAAGGAAACAAACAGTGGTGAAGTTGTTGGAAGAATGTCAGGTGATACAGTTTTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTGTGTGTCATGTTTATTAGGAGGTTTAGTTGTGGCATTCATCAAGGGTTGGCTTCTAGCCCTTGTCCTTCTATCGTCTATCCCTCTTCTTCTCCTCTCTGGTTCAATAATGAGCTTTGTATTCGCAATGATGGCGTCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAACTATAGTAGAGCGGATAATCGGTTCTATTAGAACAGTTGCATCATTTACCGGCGAAAAGCAAGCTATAGCTCAGTACAATCAATCCTTAACTAAAGCTTATAAAATTGGAGTGCAAGAAGGATTGGCTATTGGTTTAGGATTCGGTTCGGCTCGTTTATTAGTTTATTTCACTTATGCTTTGACCGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGTTATACAGGAGGTGAAGTCATAAGTGTATTTTTTGCAATTCTAACAGGTTCCTTGTCTCTAGGACAGGCATCTCCATGTTTAACTGCATTTGCAGCTGGACAAGCTGCAGCCTTTAATATGTTTGAAACAATTAAAAGGAGGCCAGAAATTGATGCTTATGATACTACTGGGAGAAAGCTTGATGACATCCGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAAATGAATTGATATTCAATGCATTTTCTATTTCAATATCAAGTGGCACTACTGCGGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCTACGGTTATTAGTTTGATAGAGAGATTTTATGATCCACAAGGTGGTGAAATCCTCATTGACAGTATCAACCTTAGAGAATTTCAACTGAAATGGATCAGACAGAAAATTGGCCTAGTCAGTCAAGAACCAGTTCTCTTTGCTTGTAGCATTAAAGAGAACATTGGCTATGGTAAGGGTGCGGCAACCGATGAAGAAATCAGATATGCAGCAGAACTTGCTAATGCTGCTAACTTCATTGATAAATTTCCCCATGGACTTGAAACGATGGTCGGAGAGCATGGAGCTCAGCTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTTTACTACTCGATGAAGCAACAAGTGCTCTTGACATGGAATCGGAAAGGGTGGTACAAGAAACACTAGACAGAATCATGATAAACCGAACAACCATCATCGTAGCTCACCGCCTAAGCACAATAAGGAATGCTGATATCATTGCCGTTGTTCACCAAGGAAAAGTAGTAGAAAAAGGTACACATGCTGAGCTCACTAAAGATCCTGATGGAGCTTATAGTCAACTCATTAGGCTGCAAGAAATTAACAAGGATTCATCAGAACAATATGATGCTAATGACTCAGATAAGCTAGAAAACATTGTAGATTCTGGAAGAGAGTCAAGCCAAAGGTCTCTAAGCCGTGAATCATCTGCAACCGGAAACAGCAGTGACAACTCCTTCAAAGCATCAAATTTTATTCCTACCACATTTGTACGAGGATCTGAATTTTCTCCTTCAGAAGAAGCAGCATCACTTAATAGTAAAACTCAAGATGTTCCGTTTCTCCGCCTCGCTTATCTTAACAAGCCTGAAATCCCCATTTTACTCATAGGGACTCTAGCAGCAGCAGTTACTGGAGCAATGCTGCCTATTCTAGGACTTCTACTCTCCAAGATGATAAATACATTCTTTGAGCCTGCAGACAAACTTCGTAAAGACTCAAAGTTTTGGGCATTAATATTTATTTCCTTTGGTGTGGCTTCCTTTGCTTTCCATCCATTAAGGTCCTACTTTTTTGCAGTAGCTGGTTCGAAGTTGATAAAAAGGATCCGGTTAATGTGTTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATAAAGCTGAGAATTCAAGTGGTGCGCTTGGAGCAAGGCTGTCAACTGATGCTGCTTCAATTCGAACTTTGGTTGGCGATGCACTCGGTTTGCTTGTTCAAGATATTGCTACAGTTATGACAGCCTTGGTAATCTCCTTTGAAGCAAATTGGCAGCTTTCTCTCATCATTATTGTTTTGGTACCTCTAATATTAGTAAATGGACATTTTCAAATCAAGTCCATGCAAGGATTCAACACAGATGCAAAGAAATTATATGAGGAAGCAAGCCAAGTAGCGAACGATGCGGTAGGGAATATCAGAACAGTTTCTGCTTTCTGTGCCGAAGAGAAGGTGATGGAATTATACCAGAAGAAATGTGTAGTACCAGTCCAGACAGGAAAAAGGCAGGGTTTAGTCAGTGGAATTGGTTTTGGCATATCAATCTTCTTTCTGTTTTGTGTCTATGCATGCAGTTTTTACGCCGGCGCACAACTTGTTGAGCATGGCAAAACAACAATATCAGAAGTTTTTCAAGTATTTTTCTCTCTCAATATGGCAGCCGTTGCAATATCTCAGTCCGGCTTCATGGCACCAGGAGCCAGTAAAGCAAAAAGTTCAGCTGCTTCTATATTTGCTATTCTTGATCAGAAATCAACAATAGACACCAGTGATGAATCAGGAATGACACTAGAAGATGTGAAAGGGGTGATAAAGTTTCACAATGTCACTTTCAAGTATCCAACTAGGCCTGATGTTCATATATTCAAAAATCTTTCATTAACCATTCATTCAGGACAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCTGATTCAGGTCAGATTAAACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAGCAAATGGGCCTGGTAAGCCAAGAGCCTGTGTTGTTCAATGACACCATCAGAGCCAACATTGCTTATGGAAAAGGTGGTAATGCAACTGAGACTGAAATTATAGCTGCGGCAGAACTGGCAAATGCTCATAAGTTCATTAGCAGTTTGCAGCAGGGGTATGATACAATAGTAGGGGAGAGAGGGACTCAACTATCCGGAGGACAGAAGCAACGCGTAGCAATTGCGAGAGCCATAGTTAACAGTCCAAGAATATTACTATTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAAGATGCACTTGATAGAGTGAGGGTGGACAGAACCACCATTGTGGTGGCTCATAGATTATCTACCATAAAGGGTGCAAATTCAATAGCAGTTGTTAAAAATGGAGTCATTGAAGAAAAAGGAAAGCATGACACATTGCTCAACAAGGGTGGTACCTATGCTTCTTTAGTAGCATTGCATACAAGTACCACTTCTTCATCTTATTAA 3897 0.4052 MLAKTSLDEDIASTEMTGSASHHPPIPAGSDNFQEMVDMHQDTKKNKVKDQSNKTVPFYKLFSFADSWDYLLMIAGTTSAVGNGVSMPLMAIIIGDTLDAFGENVNTKQVVHQVSKVSLKFAILGACAFFAVFLQVSCWMVTGERQAARIRAFYLKAVLRQDISFFDKETNSGEVVGRMSGDTVFIQEAMGEKVGKFIQCVSCLLGGLVVAFIKGWLLALVLLSSIPLLLLSGSIMSFVFAMMASRGQAAYSEAATIVERIIGSIRTVASFTGEKQAIAQYNQSLTKAYKIGVQEGLAIGLGFGSARLLVYFTYALTVWFGGKMVLEKGYTGGEVISVFFAILTGSLSLGQASPCLTAFAAGQAAAFNMFETIKRRPEIDAYDTTGRKLDDIRGDIELREVCFSYPTRPNELIFNAFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQGGEILIDSINLREFQLKWIRQKIGLVSQEPVLFACSIKENIGYGKGAATDEEIRYAAELANAANFIDKFPHGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDMESERVVQETLDRIMINRTTIIVAHRLSTIRNADIIAVVHQGKVVEKGTHAELTKDPDGAYSQLIRLQEINKDSSEQYDANDSDKLENIVDSGRESSQRSLSRESSATGNSSDNSFKASNFIPTTFVRGSEFSPSEEAASLNSKTQDVPFLRLAYLNKPEIPILLIGTLAAAVTGAMLPILGLLLSKMINTFFEPADKLRKDSKFWALIFISFGVASFAFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDIATVMTALVISFEANWQLSLIIIVLVPLILVNGHFQIKSMQGFNTDAKKLYEEASQVANDAVGNIRTVSAFCAEEKVMELYQKKCVVPVQTGKRQGLVSGIGFGISIFFLFCVYACSFYAGAQLVEHGKTTISEVFQVFFSLNMAAVAISQSGFMAPGASKAKSSAASIFAILDQKSTIDTSDESGMTLEDVKGVIKFHNVTFKYPTRPDVHIFKNLSLTIHSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATETEIIAAAELANAHKFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDTLLNKGGTYASLVALHTSTTSSSY 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04872 1298 CDD ABC_MTABC3_MDL1_MDL2 1052 1287 - -
Trre16g04872 1298 Gene3D - 1042 1296 IPR027417 -
Trre16g04872 1298 Pfam ABC transporter 1071 1220 IPR003439 GO:0005524
Trre16g04872 1298 MobiDBLite consensus disorder prediction 659 682 - -
Trre16g04872 1298 CDD ABC_6TM_Pgp_ABCB1_D2_like 720 1035 - -
Trre16g04872 1298 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1052 1289 IPR003439 GO:0005524
Trre16g04872 1298 FunFam ABC transporter B family member 1 1042 1291 - -
Trre16g04872 1298 FunFam Uncharacterized protein 1016 1042 - -
Trre16g04872 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1041 1289 IPR027417 -
Trre16g04872 1298 SUPERFAMILY ABC transporter transmembrane region 60 380 IPR036640 GO:0005524|GO:0016020
Trre16g04872 1298 PANTHER ABC TRANSPORTER B FAMILY 39 636 IPR039421 -
Trre16g04872 1298 Gene3D - 394 661 IPR027417 -
Trre16g04872 1298 Pfam ABC transporter 415 563 IPR003439 GO:0005524
Trre16g04872 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 634 IPR027417 -
Trre16g04872 1298 CDD ABC_MTABC3_MDL1_MDL2 396 634 - -
Trre16g04872 1298 SUPERFAMILY ABC transporter transmembrane region 718 1032 IPR036640 GO:0005524|GO:0016020
Trre16g04872 1298 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 731 1017 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04872 1298 ProSitePatterns ABC transporters family signature. 535 549 IPR017871 GO:0005524|GO:0016887
Trre16g04872 1298 CDD ABC_6TM_Pgp_ABCB1_D1_like 73 357 - -
Trre16g04872 1298 Gene3D ABC transporter type 1, transmembrane domain 120 962 IPR036640 GO:0005524|GO:0016020
Trre16g04872 1298 MobiDBLite consensus disorder prediction 1 32 - -
Trre16g04872 1298 SMART AAA_5 423 595 IPR003593 GO:0016887
Trre16g04872 1298 SMART AAA_5 1079 1273 IPR003593 GO:0016887
Trre16g04872 1298 MobiDBLite consensus disorder prediction 657 682 - -
Trre16g04872 1298 FunFam ABC transporter B family member 1 386 635 - -
Trre16g04872 1298 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 396 632 IPR003439 GO:0005524
Trre16g04872 1298 FunFam ABC transporter B family member 1 710 1015 - -
Trre16g04872 1298 ProSitePatterns ABC transporters family signature. 1192 1206 IPR017871 GO:0005524|GO:0016887
Trre16g04872 1298 Pfam ABC transporter transmembrane region 73 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04872 1298 Pfam ABC transporter transmembrane region 730 1002 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04872 1298 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 74 361 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04872 1298 FunFam ABC transporter B family member 9 60 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04872 Trre-Chr16 52655285 52661070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04872 54 1293 Calmodulin-binding Proteins AT2G36910 42.674 0.0 1002
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04872 K05658 - gmx:100777713 1961.04